Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00385 ATGCCTTCTCTAAACCCAAAAGCTCAAGAGTTTTTCCCAACCCATCAACACCACAAGCTTCACCCCAACCTCACCCCTCTCCACTTCTACTACTTGTTCTTCTCACGAGAGCTTCACCCTCTCTTCTaccccaccacaacgcttccacttccaccaccttccaccacccaccaTCTGTTACCACCCGCGGAGGCTCATGCAGTGCAGCAGAATGGTAAAGAGGAAGCCCCGAAATCGAAAGTGTTTAAGGCCTTCATAAGGTGTGACACCACGCGTTCTGAAGGTTTGAGGCTGAAGGGTTATGCGCGGAGAGAGAAGGGAGAGGGGAATGGTCAAAGCAGGAAGAGTGAGTGTTTGAGGAACCGATCATATGATAAACAGTGCTTCAGGGCTTTTCCTAGAAAGAAATGTTGTTACCCTTTGTTGCCTGTTAAGGTTGATGGAGGCGACACCACTGTCATGATCAGAAACATTCCCAGCAAATACACACGAAATATGCTGGTGGACTTCCTTGACAATCATTGTTTGCAAGTGAATTTACGAGACAAAGAGGCTAGCAAGGAGAAAGGGGAAGAACCAAGTGCTTTGGCGTTTGATTTTGTTTACTTGCCTATTGATTTCAAAAGTGGGTTGAACAAGGGTTACGCGTTTGTGAACTTCACCAAACCCCAGGCAGCTTGGAAGTTTCTTTTGACAGCCTCCAATATGAAATGGGACTTGTTCCAGTCCCACAAGATACGTGAAGTGGTTTCTGCACGTTTACAGGGAAAAGAGAAATTGGAGCAACACTTCGAAACCATGAACTTTCCCTGCGAGTGTGAGGATGTTCTGCCAGTGTGCTTTAGTCCACCGCGAGATGGTGTAATCAAGGGAAACCAAAGGACTGTGGGGAAACTTTTAAGGCGTAAACATGTTTGA 918 0.439 MPSLNPKAQEFFPTHQHHKLHPNLTPLHFYYLFFSRELHPLFYPTTTLPLPPPSTTHHLLPPAEAHAVQQNGKEEAPKSKVFKAFIRCDTTRSEGLRLKGYARREKGEGNGQSRKSECLRNRSYDKQCFRAFPRKKCCYPLLPVKVDGGDTTVMIRNIPSKYTRNMLVDFLDNHCLQVNLRDKEASKEKGEEPSALAFDFVYLPIDFKSGLNKGYAFVNFTKPQAAWKFLLTASNMKWDLFQSHKIREVVSARLQGKEKLEQHFETMNFPCECEDVLPVCFSPPRDGVIKGNQRTVGKLLRRKHV 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00385 305 PANTHER MEI2 C-TERMINAL RRM ONLY LIKE 2 60 290 - -
Cca04g00385 305 Gene3D - 89 261 IPR012677 -
Cca04g00385 305 SUPERFAMILY RNA-binding domain, RBD 145 238 IPR035979 GO:0003676
Cca04g00385 305 Pfam RNA recognition motif 2 196 264 IPR007201 -
Cca04g00385 305 PANTHER RNA BINDING PROTEIN 60 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00385 Cca-Chr4 3884041 3886051 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00385 - - ccaj:109818393 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00385 04 3884041 3886051 Cca04g00385 04 3884041 3886051 ECH