Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00383 ATGGCATTCAAACTCTCATCAATTCCTCTTCCCACTTCTCTCCAATTCTCTCCCCGCCAAAGCCCTAATTCCAAATGTCCAAACCATCGCCTtcctctccgttccttttcaccttctctttctccctctcTCCGTTTCTCAAGCGCAGCCTCAGCGTCCACATTTCACCACACTCGCTTCGTAACCGCTCGCGCGATTCCAAGCCACGGCGAAGGCCAATTCAGCGACGCTTTCGAAGAAGAAGACAAAGGCGAAGTAGTATCGAGGCAGGGTGAGAAGAAGGAACTCGCGAATCAAAGCATATGGAGTCAGATAAAGGAAATTGTCATGtttactggaccagcaactggtctatggatttgtggaccgcttatgagtctcatcgatactgcagttatcggtcagagaagctcaattgagcttgctgctttaggtcctgctacagttgtttgcgattacatgagctacgtgttcatgtttctatcaattgctacttccaatatggttgccactgcccttgctaaacagGACAAAGAAGAAGTACAACATCACATATCTGTCTTGCTTTTTGTTGGGTTATCTTGTGGCATTATGATGCTTTTATTCACACGGCTATTTGGTGCTTCAATTATAACTGCTTTCACTGGGCCAAAGAATGCACACATAGTACCTGCAGCTAGCACTTATGTCAAGATTCGAGGCTTGGCATGGCCTGCTTTACTTGTTGGATGGGTTGCTCAAAGTGCGAGtcttggtatgaaagattccttgggacccttgaagtctctggctgctgctactgttattaatgtcactggttgtatacttttgtgcacctgcttaggctatggaattgtaggggctgcgtgggctacaatggtttctcaaGTTGTTGCTGCGTACATGATGATTCAAACTCTAAACATGAAGGGATATAATGCACTTGCCTTCTCCATTCCTTCAGGGAAGGAGCTTCTGAATATATTTGGGCTTGCTGCTCCAGTTTTTTTGACACTGATGTCAAAGGTCGCTTTCTACTCACTACTTATATATTTTGCTACATCAATGGGTACACATACAATGGCTGCTCATCAAgtcatggtccaaacctacaccatgtgtacagtatggggtgaacctctctcccaaactgcccaatcatttatgcctgaATTAATATATGGAGTGAATCGGAGTTTGTCAAAGGCCCGATTGCTTCTTAGGTCTCTTTTGACAATCGGAGTTATACTTGGATTATTGTTAGGGACTGTTGGAACATCAGTTCCTTGGTTATTTCCCTACGTTTTTACACCTGATCGGATGGTCATTCAGGAGATGCATAAGGTGCTGATTCCATACTTTATAGCGCTGGCTATAACTCCACCTACTCACAGCCTTGAGGGAACATTGCTGGCTGGACGGGATCTGAGATTTATAAGTCTTTCGATGTGTGGATGCTTTTGTGTGGGTTCCCTTGTGTTATGGACCTTGAGTAGTAAATACGGTTTGCTAGGCTGCTGGTTTTCCCTCGCAATATTTCAATGGGCTCGGTTTTCAATTGCCCTCCAGCGCCTTCTTTCTTCCAAGGGCATTTTATACTCGGAAGATACAGACCAGTATAAGCTGCGAAAGCTAAGGACAGCTTAG 1647 0.323 MAFKLSSIPLPTSLQFSPRQSPNSKCPNHRLPLRSFSPSLSPSLRFSSAASASTFHHTRFVTARAIPSHGEGQFSDAFEEEDKGEVVSRQGEKKELANQSIWSQIKEIVMFTGPATGLWICGPLMSLIDTAVIGQRSSIELAALGPATVVCDYMSYVFMFLSIATSNMVATALAKQDKEEVQHHISVLLFVGLSCGIMMLLFTRLFGASIITAFTGPKNAHIVPAASTYVKIRGLAWPALLVGWVAQSASLGMKDSLGPLKSLAAATVINVTGCILLCTCLGYGIVGAAWATMVSQVVAAYMMIQTLNMKGYNALAFSIPSGKELLNIFGLAAPVFLTLMSKVAFYSLLIYFATSMGTHTMAAHQVMVQTYTMCTVWGEPLSQTAQSFMPELIYGVNRSLSKARLLLRSLLTIGVILGLLLGTVGTSVPWLFPYVFTPDRMVIQEMHKVLIPYFIALAITPPTHSLEGTLLAGRDLRFISLSMCGCFCVGSLVLWTLSSKYGLLGCWFSLAIFQWARFSIALQRLLSSKGILYSEDTDQYKLRKLRTA 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00383 548 PANTHER PROTEIN DETOXIFICATION 46, CHLOROPLASTIC 58 537 - -
Cca04g00383 548 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 58 537 IPR044644 -
Cca04g00383 548 CDD MATE_DinF_like 106 527 IPR044644 -
Cca04g00383 548 Pfam MatE 122 274 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca04g00383 548 TIGRFAM matE: MATE efflux family protein 116 507 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00383 Cca-Chr4 3873977 3879170 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00383 K03327 - gmx:100778835 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00383 04 3873977 3879170 Cca04g00383 04 3873977 3879170 ECH