Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00382 ATGGCATTCAAACTCTCATCAATTCCTCTTCCCACTTCTCTCCAATCCTCTCCCCGCCAAAACCCTAATTCCACATTTCCAAACCATCGTCTTCCTCTCCGTTCCCTTTCACCTTCTCTTTCTCCCTCTCTCCGCCTCTCAAGCGCAGCCACAGCGTCCGCATTTCACCACACTCGCTTCGTAACCGCTCGCGCGATTCCAAGCCACGGCGAAGGCCAATTCAGCGACGCTTTCgaagaagaagacagagacgaagaagCATCGAGGCAGGGTGAGAAGAAGGAACTCGCGAAGCATAGCATATGGAGTCAGATAAAGGAAATTGTCATGTTTACTGGACCAGCAACCGGACTTTGGATTTGTGGACCACTCATGAGTCTCATCGACACTGCAGTTATCGGTCAGCGAAGCTCAATAGAGCTTGCTGCTTTAGGTCCTGCTACAGTTGTTTGTGATTACATGTGCTACGTGTTCATGTTTCTGTCAATCGCTACTTCCAATATGGTTGCTACTGCCCTTGCTAAACAGGACAAAGGAGAAGTACAACATCACATATCTGTCTTGCTTTTTGTTGGGTTGTCTTGTGGCATTGCAATGCTTTTGTTCACAAGGCTATTTGGTGCTGCAACAGTGTCTGCATTCATTGGGCCAAAGAATGTACACGTAGTACCTGCAGCTAGCAATTATGTAAAGATTCGAGGCTTGGCATGTCCTGCTTTACTTGTTGGATGGGTTGCTCAGAGTGCAAGtctcggtatgaaagattcctggggacccttgaaagctctggctgctgctagttttataaatgtcattggttgtatacttctgtgcatctatttaggctatggaattgtaggagctgcgtgggctacaatggtttcacaaGTTGTTGCTGCTTACATGATGATTCAAACACTAAACATGAAGGGATATAATGCACTTGCCTTCTCCATTCCTTCACGGAAGGAACTTCTGACAATATTTGGGCTTGCTGCTCCTGTATTTATGACAATGATGTCAAAGGTGGCTTTCTACTCACTGCTTATATATTTTGCTACATCAATGGGCACACATACAATGGCTGCTCATCAAGTCATGGTCCAAACCTTTTGTAtgtgtacagtatggggtgaacctctctcccaaactgctcaatcatttatgcctgaATTAATGTATGGAGTGAATCGGAATTTGTCAAAGGCCCGGTTGCTTCTAAGGTCTCTTGTGATAATCGGAGCTATACTGGGATTATTGTTAGGGATTGTTGGAACATCAATTCCTTGGTTATTTCCCTACATTTTTACACCTGATCGGATGGTCATCCAGGAGATGCATAAGGTGCTGATTCCATACTTTATAGCCCTGGCTATAACTCCCCCTGCTATCAGCCTTGAGGGAACGTTGCTGGCTGGACGGGATCTGAAATATATAAGTTTGTCAATGAGCGGATGCTTTTGTGTGGGTTCACTAGTATTATGGATCTTGAGTAGTAGATACGGTTTGCTAGGCTGCTGGTTTTCCCTCGCAATATTTCAATGGGCTCGGTTTGCAATGGCCCTCCAGCGCCTTCTTTCTCCGAAGGGCATTTTATACTCGGAAGATACTGACCAGTACAAGGTGCTAAAGCTAAGGACTGCCTAG 1647 0.3959 MAFKLSSIPLPTSLQSSPRQNPNSTFPNHRLPLRSLSPSLSPSLRLSSAATASAFHHTRFVTARAIPSHGEGQFSDAFEEEDRDEEASRQGEKKELAKHSIWSQIKEIVMFTGPATGLWICGPLMSLIDTAVIGQRSSIELAALGPATVVCDYMCYVFMFLSIATSNMVATALAKQDKGEVQHHISVLLFVGLSCGIAMLLFTRLFGAATVSAFIGPKNVHVVPAASNYVKIRGLACPALLVGWVAQSASLGMKDSWGPLKALAAASFINVIGCILLCIYLGYGIVGAAWATMVSQVVAAYMMIQTLNMKGYNALAFSIPSRKELLTIFGLAAPVFMTMMSKVAFYSLLIYFATSMGTHTMAAHQVMVQTFCMCTVWGEPLSQTAQSFMPELMYGVNRNLSKARLLLRSLVIIGAILGLLLGIVGTSIPWLFPYIFTPDRMVIQEMHKVLIPYFIALAITPPAISLEGTLLAGRDLKYISLSMSGCFCVGSLVLWILSSRYGLLGCWFSLAIFQWARFAMALQRLLSPKGILYSEDTDQYKVLKLRTA 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00382 548 TIGRFAM matE: MATE efflux family protein 116 507 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca04g00382 548 MobiDBLite consensus disorder prediction 72 93 - -
Cca04g00382 548 PANTHER PROTEIN DETOXIFICATION 46, CHLOROPLASTIC 46 537 - -
Cca04g00382 548 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 46 537 IPR044644 -
Cca04g00382 548 MobiDBLite consensus disorder prediction 1 33 - -
Cca04g00382 548 CDD MATE_DinF_like 106 527 IPR044644 -
Cca04g00382 548 Pfam MatE 122 275 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca04g00382 548 MobiDBLite consensus disorder prediction 8 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00382 Cca-Chr4 3865978 3872289 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00382 K03327 - gmx:100778295 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00382 04 3865978 3872289 Cca04g00382 04 3865978 3872289 ECH