LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca04g00381	ATGGGGAGTTTGGGAGCGATTCTGAAGCATCCAGATGACTTCTACCCGCTGATGAAGCTGAAAATGGCGGCGAGAAACGCTGAAAAGCAGATCCCGCCGGAGCCACACTGGGCCTTCTGCTACACTATGCTCCACAAGGTTTCTCGAAGCTTCGCATTCGTCATTCAGCAACTCGGTACCGAACTTCGCAACGCCGTTTGCATATTCTATTTGGTTCTTCGAGCGCTCGACACCGTTGAGGATGATACTAGCATAGCTACAGATGTTAAGGTGCCAATACTGATAGCTTTTCATAGTCATGTTTACGATCGTGATTGGCACTTTTCATGTGGCACAAAGGAGTACAAAGTTTTAATGGACCAGTTTCATCACGTTTCAACTGCTTTTCTGGAACTTGGAAAGAACTATCAGGAAGCAATTGAGGACATTGCCAAAAGAATGGGTGCTGGAATGGCCAAATTTATTTGCAAGGAGGTAGAAACAATTGATGACTACGATGAATATTGTCACTACGTGGCAGGACTTGTTGGACTGGGTTTATCAAAACTTTTCCATGCCTCTGGTTCAGAAGATCTGGCATCAGATTCCctttccaattcaatgggcttgtttcttcagAAAACAAACATTATTCGAGATTATCTGGAAGACATCAATGAGATCCCCAAGTCACGCATGTTTTGGCCACGGCAGATTTGGAGTAAATATGTTAACAAACTTGAGGATTTGAAATCTGAGGAGAACTCTGTTAAGGCAGTGCAATGCTTAAATGACATGGTCACTAATGCTCTGATGCATGGTGAAGATTGTTTAAAATACATGTCTGCTTTACGAGACTTGGCAATATTTCGCTTTTGTGCTATACCCCAGATTATGGCAATTGGAACACTTGCATTGTGCTACAACAACATTGAGGTCTTCAGAGGTGTAGTTAAAATGAGGCGCGGTTTAACTGCCAAAGTGATTGACCGAACAAAGACAATGGCTGATGTCTATGGTGCTTTCTTTGATTTTGCTTCTATGTTGGAGTCCAAGGTTGACAAAAATGATCCCAATGCAACAAAAACATTGAGCAGGCTTGAAGCGATACAGAAAACTTGCAGAGAATCTGGTCTCTTGAGTAAAAGGAAATCTTACATTCTGAAGAATGAAAATGGATATGGCTCAACCATGATTGTCATACTGATCATCTTGATTTCCATCACTTTTGCTTATCTGTCTGCTAACCACCATAATAAATATAACTAG	1248	0.4079	MGSLGAILKHPDDFYPLMKLKMAARNAEKQIPPEPHWAFCYTMLHKVSRSFAFVIQQLGTELRNAVCIFYLVLRALDTVEDDTSIATDVKVPILIAFHSHVYDRDWHFSCGTKEYKVLMDQFHHVSTAFLELGKNYQEAIEDIAKRMGAGMAKFICKEVETIDDYDEYCHYVAGLVGLGLSKLFHASGSEDLASDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVNKLEDLKSEENSVKAVQCLNDMVTNALMHGEDCLKYMSALRDLAIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTKTMADVYGAFFDFASMLESKVDKNDPNATKTLSRLEAIQKTCRESGLLSKRKSYILKNENGYGSTMIVILIILISITFAYLSANHHNKYN	415

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca04g00381	415	PANTHER	SQUALENE SYNTHASE-LIKE ISOFORM X1	1	410	-	-
	Cca04g00381	415	SUPERFAMILY	Terpenoid synthases	36	367	IPR008949	-
	Cca04g00381	415	TIGRFAM	squal_synth: farnesyl-diphosphate farnesyltransferase	36	367	IPR006449	GO:0004310\|GO:0008610
	Cca04g00381	415	ProSitePatterns	Squalene and phytoene synthases signature 2.	201	229	IPR019845	GO:0016765
	Cca04g00381	415	Gene3D	Farnesyl Diphosphate Synthase	34	371	IPR008949	-
	Cca04g00381	415	CDD	Trans_IPPS_HH	38	320	IPR033904	GO:0004311
	Cca04g00381	415	Pfam	Squalene/phytoene synthase	45	315	IPR002060	GO:0009058
	Cca04g00381	415	PANTHER	FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE	1	410	IPR044844	GO:0004311
	Cca04g00381	415	SFLD	Squalene/Phytoene Synthase Like	36	325	IPR002060	GO:0009058
	Cca04g00381	415	SFLD	Isoprenoid Synthase Type I	36	325	-	-
	Cca04g00381	415	ProSitePatterns	Squalene and phytoene synthases signature 1.	168	183	IPR019845	GO:0016765

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca04g00381	K00801		-	gmx:547940	787.334

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca04g00381	04	3846660	3854919	Cca04g00381	04	3846660	3854919	ECH