Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00376 ATGAGAAAAATGAAGGCGTGGAGGGCGTTGGAAATTGCGGTGTTTCATGCGTTGTTGTTTGGATTTGGGAGAGGACACGACTACGGAGAGGCATTGTCGAAGGCGATTGTGTTCTTCGAGGGACAGAGATCGGGCTTTCTGCCGGGGGATCAGAGGCTCAATTGGCGAGGGAATTCCGGCCTCAGTGACGGCTGGAACTACAACACGGATCTCACCGGCGGCTACTACGACGCCGGCGACAACGTTAAGTTCGGGTTTCCGATGGCCTTCACCACCACAATGCTCGCCTGGAGCTTGCTGGAATTCGGAGACCTCATGCCTCCCAATCAGCTCAGGAACGCCCTCGTCGCCACTCGTTGGGGCGCTGATTACTTGCTCAAGACTCTTTCTCAGCCCAATCGGATTTTCGTTCAGGTTAATTCATTCCTATTCATTGCATCAACATCAATTCTcattttgcattttgcattttgcattttgcattttgcTCAACAATACTCCACTCTCCACGGCATGAACCAATGGGTCGTGTTTCCAATTTCATGTGAACTTTCCATTCTTTTCAAGTCCGTCAAGTTCACAGGCTTGGAATTTGTCCTTGCTGACGGTGACAGCAAAGACATTTTTCTTTTTCCATTTGATTCTCAGGATTTGTGTGCGTTGAGTCATGAAGTCATAGAAGGAAACATGTACTCTCTTGAGTCTTATAAGTCCTCAGCAGAGAGCTTCCTTTGCACACTCATACCTGAATCACCAACCTCACACATACAGTACACCCCTGGTGGACTTGTATACAGACCCGGAGCCATCAATTGTGGCAATGTCTATGTCAGTGCACAAACACTTCGCCAACATGCTAAGAGGCAAGTTGATTACATTTTGGGTGATAACCCAATGGGATTATCCTACATGGTTGGCTATAGCAACTACTATCCTCAACGTATTCATCACCGTGGCTCTTCTTTACCCTCCATCAAGGATCACCCTCAATTCATTGCGTGCAAAGAAGGTTCAATTTACTACAACTCAACCAACCCAAATCCTAATGTACTTGTGGGTGCCATTGTTGGAGGGCCtgatgaaaatgatgattatgaggatgatCGAATTGATTTTAGGAAATCCGAGCCAACCACATACATTAACGCACCATTTGTTGGGGTTCTAGCCTATTTTGCTGCTAATCCCAACGTTAGTTGA 1200 0.4483 MRKMKAWRALEIAVFHALLFGFGRGHDYGEALSKAIVFFEGQRSGFLPGDQRLNWRGNSGLSDGWNYNTDLTGGYYDAGDNVKFGFPMAFTTTMLAWSLLEFGDLMPPNQLRNALVATRWGADYLLKTLSQPNRIFVQVNSFLFIASTSILILHFAFCILHFAQQYSTLHGMNQWVVFPISCELSILFKSVKFTGLEFVLADGDSKDIFLFPFDSQDLCALSHEVIEGNMYSLESYKSSAESFLCTLIPESPTSHIQYTPGGLVYRPGAINCGNVYVSAQTLRQHAKRQVDYILGDNPMGLSYMVGYSNYYPQRIHHRGSSLPSIKDHPQFIACKEGSIYYNSTNPNPNVLVGAIVGGPDENDDYEDDRIDFRKSEPTTYINAPFVGVLAYFAANPNVS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00376 399 Pfam Glycosyl hydrolase family 9 28 140 IPR001701 GO:0004553|GO:0005975
Cca04g00376 399 Pfam Glycosyl hydrolase family 9 232 389 IPR001701 GO:0004553|GO:0005975
Cca04g00376 399 SUPERFAMILY Six-hairpin glycosidases 26 395 IPR008928 GO:0005975
Cca04g00376 399 PANTHER ENDO-1,4-BETA-GLUCANASE 221 270 - -
Cca04g00376 399 PANTHER ENDO-1,4-BETA-GLUCANASE 269 398 - -
Cca04g00376 399 Gene3D - 24 143 IPR012341 GO:0005975
Cca04g00376 399 PANTHER ENDO-1,4-BETA-GLUCANASE 17 140 - -
Cca04g00376 399 Gene3D - 215 398 IPR012341 GO:0005975
Cca04g00376 399 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 292 318 IPR018221 -
Cca04g00376 399 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 365 383 IPR033126 -
Cca04g00376 399 PANTHER ENDOGLUCANASE 24 17 140 - -
Cca04g00376 399 PANTHER ENDOGLUCANASE 24 221 270 - -
Cca04g00376 399 PANTHER ENDOGLUCANASE 24 269 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00376 Cca-Chr4 3802145 3806769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00376 12 395 Glycoside Hydrolase AT1G70710 41.458 1.76e-111 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00376 K01179 - pvy:116130048 472.241