Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00374 ATGATGAACATAGCAAATGTAACAGACAAGATAACCTTTGAATTTGCAGAGCTAACCATGACTCTGAACCTCACACACTCCACACTCCCTCCTTATTCTTCCACTTCTCTCACTCTTTCGAAACCTTTCTTTCTCTTTCACTCCAAAATCTCAACCTCATCATCACTCTCCAAAACCCTATGTCTATGTGCATCACCATCTAACACACCAACCGCCATTTTCCTCCCATATCTCCAACaaccagaaccagaaccagaaccagaaccagaaAAACATGAACAAAAGTTCATagaaacagtagaagaagaagaaaaagaagaagaagCACATGACCCAGATGATCCAATCTACAAATTCTTCAAAACTCGCACAAGGGTTTCCTCCCAAGACCCTGGAAAAGAAGGAAAATTGTCCCTTCAGAAGAACCGTCGCATCTCATGGCACCTTGCTTCTGACCTTGTTGAAGAAGAACCTGAAACGGGTTTGGAGGAAGGGTCCTTGTTGGTTGAGGACAAGGAAGAAACGGTGTGTGAGAAGAAAGGTTTGCCTGAGGGCATTGTGGGGGAAATTGTTCATCTTGCAAGGAACTTGCAGCAGAATTTGACTTTAGAGGAGGTTTTGAATGAGTATGAAGGAAGGGTTAGTGAGGAAGAGTGTTGGGAGGTTTTGAGAGTACTTGGGGAGGAGCACCTTCTGGTGTGTTGTTTGTATTTCTTTCAGTGGATGAGGTTGCAGGATCCCTCGCTTGTTACACCTCGGGCTTGTACTGTCTTGTTTCCTTTGTTGGGGAAGGCAAGGATGGGTGATAAGTTGATGGTTTTGTTCACAAACTTGCCTTCCACCAAGGAGTTCAGAGATGCTCATGTTTACAATGCCGCCATTTCGGGTCTTCTTTCTAGTGGCAGGTATGAAGATGCTTGGAAGGTGTATGAGTCAATGGAAGCTGATAATGTTCTTCCAGATCATGTGACGTGTTCTATCATGGTTATTGTTATGAGAAAACTTGGCCATAGTGCAAAAGATGCATGGCAATTTTTTGAGAAAATGAATGGAAAAGGAGTCAAATGGGGTGAAGAAGTCCTAGGGGCATTAATAAAGTCATTTTGTGTTGAGGGTTTGATGAGTGAGGCTCTCATCATCCTATCTGAAATGGAGAAGAAAGGTGTTTCTTCAAATGCAATTGTGTACAATACCCTGATGGATGCATATTGTAAATCCAACCGTGTAGAAGAGGCTGAAGGCCTTTTTGTTGAGATGAAAGCTAAAGGGATTAGGCCAACTGAAGCTACCTTTAACATTCTAATGTATGCGTACAGCAGAAAAATGCAACCTGAGATTGTTGAGAAGCTGATGGATGAAATGCAGGATGTTGGCTTGAAGCCAAATGCCAAATCATATACTTGTCTTATCAGTGCATATGGGAAGCAGAAAAAGATGAGTGATATGGCTGCAGATGCGTTCTTGAAGATGAAAAAAGAAGGTATTAAACCCACTTCACATTCTTATACAGCTCTGATCCATGCATATTCAGTTAGTGGCTGGCATGAGAAAGCTTATGTGGCATTTGAAAACATGCAAAGGGAAGGTGTTAAACCTTCCATAGAAACCTACACTGCTTTACTTGATGCATTTAGACGTGCTGGTGACACCCAAACAATGACGAAAATATGGAAGTTGATGAGGAGGGAGAAAGTTGAAGGAACACGTGTGACATTCAACACTCTTGTCGATGGTTTTGCTAAACATGGTCACTACAAGGAAGCAAGAGATGTAATATCTGAATTTGGGAATGTTGGATTGCACCCAACAGTGATGACATACAATATGCTGATGAATGCATACGCCCGAGGAGGGCGACACTCAAAGCTGCCAGAGTTGTTGGAAGAGATGGTAGCTCATAACTTAAAGCCAGATTCTGTAACTTATTCAACCATGATATATGCCTTTCTTCGTGTTCGAGATTTTAGGCAGGCATTTTTTTACCACCAGGAGATGGTTGAGAGTGGGAAGGTGATGGATGTCAATTCTTACCAGAAGCTTCGAGCGATTCTGGATATGAAAGCTGCAATCAAAAACAGGAAGGATAGGAGATCCCTGATTGGTGTAGTTAGAAATAAGATGGGTGTTGTGAAACCGAAAAGAAAGAAGGATGGGTTATGGAAGTACAGGAAAAGAAATGTGAAAAACGGTAGTTCTGATATTAGTGTAAAGTAA 2214 0.407 MMNIANVTDKITFEFAELTMTLNLTHSTLPPYSSTSLTLSKPFFLFHSKISTSSSLSKTLCLCASPSNTPTAIFLPYLQQPEPEPEPEPEKHEQKFIETVEEEEKEEEAHDPDDPIYKFFKTRTRVSSQDPGKEGKLSLQKNRRISWHLASDLVEEEPETGLEEGSLLVEDKEETVCEKKGLPEGIVGEIVHLARNLQQNLTLEEVLNEYEGRVSEEECWEVLRVLGEEHLLVCCLYFFQWMRLQDPSLVTPRACTVLFPLLGKARMGDKLMVLFTNLPSTKEFRDAHVYNAAISGLLSSGRYEDAWKVYESMEADNVLPDHVTCSIMVIVMRKLGHSAKDAWQFFEKMNGKGVKWGEEVLGALIKSFCVEGLMSEALIILSEMEKKGVSSNAIVYNTLMDAYCKSNRVEEAEGLFVEMKAKGIRPTEATFNILMYAYSRKMQPEIVEKLMDEMQDVGLKPNAKSYTCLISAYGKQKKMSDMAADAFLKMKKEGIKPTSHSYTALIHAYSVSGWHEKAYVAFENMQREGVKPSIETYTALLDAFRRAGDTQTMTKIWKLMRREKVEGTRVTFNTLVDGFAKHGHYKEARDVISEFGNVGLHPTVMTYNMLMNAYARGGRHSKLPELLEEMVAHNLKPDSVTYSTMIYAFLRVRDFRQAFFYHQEMVESGKVMDVNSYQKLRAILDMKAAIKNRKDRRSLIGVVRNKMGVVKPKRKKDGLWKYRKRNVKNGSSDISVK 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00374 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 497 IPR002885 -
Cca04g00374 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 603 637 IPR002885 -
Cca04g00374 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Cca04g00374 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 567 IPR002885 -
Cca04g00374 737 PANTHER OS03G0856100 PROTEIN 15 733 - -
Cca04g00374 737 Pfam Pentatricopeptide repeat domain 449 509 IPR002885 -
Cca04g00374 737 Pfam Pentatricopeptide repeat domain 522 577 IPR002885 -
Cca04g00374 737 Gene3D Tetratricopeptide repeat domain 488 734 IPR011990 GO:0005515
Cca04g00374 737 Gene3D Tetratricopeptide repeat domain 340 487 IPR011990 GO:0005515
Cca04g00374 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Cca04g00374 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Cca04g00374 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Cca04g00374 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Cca04g00374 737 Pfam PPR repeat family 286 329 IPR002885 -
Cca04g00374 737 Pfam PPR repeat family 392 438 IPR002885 -
Cca04g00374 737 Pfam PPR repeat family 602 649 IPR002885 -
Cca04g00374 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 568 602 IPR002885 -
Cca04g00374 737 PANTHER - 15 733 - -
Cca04g00374 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 638 672 IPR002885 -
Cca04g00374 737 TIGRFAM PPR: pentatricopeptide repeat domain 394 428 IPR002885 -
Cca04g00374 737 TIGRFAM PPR: pentatricopeptide repeat domain 465 498 IPR002885 -
Cca04g00374 737 TIGRFAM PPR: pentatricopeptide repeat domain 289 321 IPR002885 -
Cca04g00374 737 TIGRFAM PPR: pentatricopeptide repeat domain 430 463 IPR002885 -
Cca04g00374 737 TIGRFAM PPR: pentatricopeptide repeat domain 536 566 IPR002885 -
Cca04g00374 737 TIGRFAM PPR: pentatricopeptide repeat domain 500 533 IPR002885 -
Cca04g00374 737 TIGRFAM PPR: pentatricopeptide repeat domain 606 639 IPR002885 -
Cca04g00374 737 TIGRFAM PPR: pentatricopeptide repeat domain 570 603 IPR002885 -
Cca04g00374 737 TIGRFAM PPR: pentatricopeptide repeat domain 640 673 IPR002885 -
Cca04g00374 737 Gene3D Tetratricopeptide repeat domain 186 339 IPR011990 GO:0005515
Cca04g00374 737 Pfam PPR repeat 363 389 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00374 Cca-Chr4 3788092 3791609 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00374 272 694 Glycosyltransferase AT1G05670 25.328 7.40e-44 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00374 - - ccaj:109799145 1383.24