Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00360 ATGGAAGTTAACCTCTCTTTCTCTCTCAACCACCAccgctccctcgccctaacctcccgcactccctccctctccactctccgcactcacttcctcggctccctccacgctctccgccctcctcccccctccctccgctcccgcAACAACCGCCGCAACAACCTCCGCCTCCTCCGCCTCCACTCCCCTCGCTTCGTCTTCAAGGCCTCCTTCACTTCTCACTCCGTCATCGTCCTCGTCCTCGTCGTCACTCTCTCCGCCGTTTCCTTCCTCCACTTCACTCTCAACAAGAGAAAGAAATCTCTCAACCAGACACGTGGACATGCCAAATTTGTGTTGTCGCCGCAGGGAACTAGTGTTGGGAACCAGGTCATTGATGGACAGATTCTCGGTTTTCCGGAATTTCAAACCGATAATAATAGCACACTGGCTGAAATGGCCAAGTTGAAGGAACACCATGAGGAAGACTACCTATTTTTGAAATCTTCGGTGGTGCAGGAAGTGGCCGTCGCGACTGAGGCATCAGAGTCTTCGTCGTCTGTTATTGACTCCGGTGCCAATAGTAACAGCTCCAAGGTATTGGATGAGTCTTTTTTATCAATGTCTTTCCCGCCAAGTTCGTTGCAGCCTCTAGAGTTTGCTGAGGAAATGGCTATACAAGTGGAAGAAAGTCAAGATAAAGTTGACTCTGATCTCGAGTTGCCTTTGGATATGGTTAAATCTGAGCATACTGCTTCTCCTGCTTGTGTAAATGATGCATTGGCGACGGTTGATGAACATACTAAGGAAAAAATTGAACTAGGTGCCATCAATGGTGATTTCTTTTTCAGTGAATCAGTCAGGGAGGGGCTGTACATGTTTTATGAGGATAACAAGTCTGCAACTGGATCCATGACACCACTGAGTGGTTTAAAGTCATTTTCTCCCCGTGCTTCTTTTATGAATAAAAAAGGATTTCCCTCAGCGATGGGAAATGGCACACTAAAATCATCAGGACTATCTACAGATATTTCTCTTCAAAGGGCAGAACACGTCAAAGGAGCAGTTAAAATTTCCAGTCACAAAGAAGGCTACCCTCCACAACTTGTGAGTAAAATCTTGAGGAAAGGCAGCAGCTCTTTAAGAGACAGGGAAAGGAACAATATGGATCACAATAATAACAATGTTTTCCCCCTGAATGCTCACTCAATCAAGGTGCATGTTGATCAGAAAAATGATCAGATCATGGTGCATGATGATCAGACAATTGATCCTTCAAAGCATCTTAACAAATACAATAATTTGCTAAAAGCTGGCAGGTTACATGAATGTGTGGAATTGCTTAAAGATGTGGAAACAAAGGGTTTATTGGACATGACCAAGGTTTATCATGCCAAGTTTTTTAACATCTGCAAGAAACGGAAGGCTGTTAAAGAAGCTTTTGATTACACTAGGCTTATTCCAAATCCAACGCTGAGTACATTTACTATGCTTATGTCAGTGTGTGCACGCTCCCAAGATTCAGAAAGGGCTTTCCAAGTTTTGCAGCTTCTTAAGGATGCTCGACTAGAACCTGATTGCAAACTTTATACCACTTTGATATTAACTTGTGCAAAGAGTGGGAAAGTTGATCTAATGTTTGAAGTGTTTCACAAGATGGTTAATTCTGGAGTGGAACCTAATGTTCATACCTATGGAGCACTTATTGATGGTTGTGCTAGAGCTGGGCAAGTAGCTAAGGCATTTGGTGCTTATGGGATAATGAGGTCAAAGAACGTGAAGCCAGATCGTGTTGTATTCAATGCACTTATATCTGCTTGTGCCCAATCAGGAGCAGTAGATCGTGCTTTTGATGTGTTAGCAGAAATGGCAGCTGAAACACAACCCATCAACCCAGATCACATAACTATAGGTGCATTGTTGAAGGCATGTACAAAATGTGGTCAGGTTGAACGAGCACAGGAAGTGTACAAGATGATACAAAAATATAACATAAAGGGATGTCCAGAAGTTTACACCATTGCCATTAATTCTTGCAGCCAAACTGGAGATTGGGAATTCGCTCGAACTGTATACAATGACATGACCCAGAACGGGATCCTCCCAGATGAGATGTTTCTAAGTGCACTAATAGATGTTGCTGGGCATGCTAAAATGCTGGATGCTGCCTTTGATGTCTTGCAAGAAGCCCGTAAAGGAGGAATTAATATTGGAATAATGTCATATAGCTCATTGATGGGTGCCTGTAGCAATGCAAGAAATTGGCAGAAAGCATTGGAGCTATATGAATATATTAAATCTCTTAAATTGACGATAACAGTTTCAACAATTAATGCTTTGCTCACTGCACTTTGTGATGGAGATCAATTTCAAAAGGCTTTGGAGGTTTTATTTGAAATGAAAGGATTAGGATTGCGTCCAAACAGTATCACGTACTCAATACTTATAGTGGCCAGCGAGAAAAAGGATGATATGGAAGCAGCTCAAATGCTCCTTTCTCAAGCCAAAAAAGACGGTGTAGCAACTAATCTCATCATGAGTCGATGCATAATTGGAATGTGCCTGCGGAGATTTGAGAGCGCTTGCCTTATTGGTGAACCAGTTTTATCTTTTGATTCAGGACGGGCACAAGTTGATAACAAATGGACATCACTGGCCTTAATGGTGTATCGTGAAACAATTGAAGCTGGTGAAAAACCTACAAGTGAAATATTGTCACAAATTCTGGGATGCCTGCAACTCCCGTATGATACATCTGTGAAAAATAGACTTGTTGAGAACCTAAGAGTAAGTGCAGAAACTTCAAGAAGGTCAAGCCTCTGTTCATTAATAGATGGATTTGGTGAATATGATCCTCGTGCATTTTCAATACTTGAGGAATCTGCTTCACATGGAGTTGTTCCATCGGTATCATTTAAAGTGAGTCCTATAGTTATTGATGCTAAAGAATTGCATGCTTCTACTGCTGAGGTGAGCTTGTCAAATTCCTACAATGATTATTTATGTTGCATAAAAGCTTTGCATTTTAACTGTGAAAGGCTAGAGAAAGATAGAACTGTATGTGTGGGATTCATTAACTCAATTATATTTGGGAACTACATTCACTGA 3087 0.3981 MEVNLSFSLNHHRSLALTSRTPSLSTLRTHFLGSLHALRPPPPSLRSRNNRRNNLRLLRLHSPRFVFKASFTSHSVIVLVLVVTLSAVSFLHFTLNKRKKSLNQTRGHAKFVLSPQGTSVGNQVIDGQILGFPEFQTDNNSTLAEMAKLKEHHEEDYLFLKSSVVQEVAVATEASESSSSVIDSGANSNSSKVLDESFLSMSFPPSSLQPLEFAEEMAIQVEESQDKVDSDLELPLDMVKSEHTASPACVNDALATVDEHTKEKIELGAINGDFFFSESVREGLYMFYEDNKSATGSMTPLSGLKSFSPRASFMNKKGFPSAMGNGTLKSSGLSTDISLQRAEHVKGAVKISSHKEGYPPQLVSKILRKGSSSLRDRERNNMDHNNNNVFPLNAHSIKVHVDQKNDQIMVHDDQTIDPSKHLNKYNNLLKAGRLHECVELLKDVETKGLLDMTKVYHAKFFNICKKRKAVKEAFDYTRLIPNPTLSTFTMLMSVCARSQDSERAFQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACAQSGAVDRAFDVLAEMAAETQPINPDHITIGALLKACTKCGQVERAQEVYKMIQKYNIKGCPEVYTIAINSCSQTGDWEFARTVYNDMTQNGILPDEMFLSALIDVAGHAKMLDAAFDVLQEARKGGINIGIMSYSSLMGACSNARNWQKALELYEYIKSLKLTITVSTINALLTALCDGDQFQKALEVLFEMKGLGLRPNSITYSILIVASEKKDDMEAAQMLLSQAKKDGVATNLIMSRCIIGMCLRRFESACLIGEPVLSFDSGRAQVDNKWTSLALMVYRETIEAGEKPTSEILSQILGCLQLPYDTSVKNRLVENLRVSAETSRRSSLCSLIDGFGEYDPRAFSILEESASHGVVPSVSFKVSPIVIDAKELHASTAEVSLSNSYNDYLCCIKALHFNCERLEKDRTVCVGFINSIIFGNYIH 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00360 1028 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 731 765 IPR002885 -
Cca04g00360 1028 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 484 518 IPR002885 -
Cca04g00360 1028 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 589 623 IPR002885 -
Cca04g00360 1028 Gene3D Tetratricopeptide repeat domain 566 729 IPR011990 GO:0005515
Cca04g00360 1028 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 519 553 IPR002885 -
Cca04g00360 1028 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 626 660 IPR002885 -
Cca04g00360 1028 Coils Coil 811 831 - -
Cca04g00360 1028 Pfam Pentatricopeptide repeat domain 485 531 IPR002885 -
Cca04g00360 1028 Pfam Pentatricopeptide repeat domain 542 601 IPR002885 -
Cca04g00360 1028 Pfam Pentatricopeptide repeat domain 789 847 IPR002885 -
Cca04g00360 1028 TIGRFAM PPR: pentatricopeptide repeat domain 769 801 IPR002885 -
Cca04g00360 1028 TIGRFAM PPR: pentatricopeptide repeat domain 664 697 IPR002885 -
Cca04g00360 1028 TIGRFAM PPR: pentatricopeptide repeat domain 591 616 IPR002885 -
Cca04g00360 1028 TIGRFAM PPR: pentatricopeptide repeat domain 522 555 IPR002885 -
Cca04g00360 1028 TIGRFAM PPR: pentatricopeptide repeat domain 556 589 IPR002885 -
Cca04g00360 1028 TIGRFAM PPR: pentatricopeptide repeat domain 487 520 IPR002885 -
Cca04g00360 1028 TIGRFAM PPR: pentatricopeptide repeat domain 734 763 IPR002885 -
Cca04g00360 1028 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 69 986 - -
Cca04g00360 1028 Gene3D Tetratricopeptide repeat domain 433 565 IPR011990 GO:0005515
Cca04g00360 1028 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 661 695 IPR002885 -
Cca04g00360 1028 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 766 800 IPR002885 -
Cca04g00360 1028 Gene3D Tetratricopeptide repeat domain 757 833 IPR011990 GO:0005515
Cca04g00360 1028 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 554 588 IPR002885 -
Cca04g00360 1028 Pfam Pentacotripeptide-repeat region of PRORP 634 776 IPR033443 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00360 432 850 Glycosyltransferase AT1G05670 23.709 1.72e-25 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00360 - - gmx:100814164 1528.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00360 04 3515427 3526342 Cca04g00360 04 3515427 3526342 ECH