Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00357 ATGAATATGGGTATTCAAGCACCGTGGTATACAAATAATTCTGTTTCTCAGTTTTGCAACAACGATTTTTGGGCTGGTGGACTATCTGATTCTCATCTCAATTTTGACCAGAAACATCATCAACAACAGCAACTATCAGAACAGCATTTCAGAGAATTATATAATTTGAGTCAAGGAATTGTTCAGTCAAATCTTCATGTTCATAATTCAAAACCAGTGAATTGTCTTATGCTTGAGAAGGAGATTGATCAATATATCAAATCTCAGAATGAGGAACTGGGACATATGTTGCGTGAGCATGGTAAACAAGAAGTGAGAGCATTGTTGAAAATGTTGGAGTGTCGTTCACTTCATGTCTTAAGTAAAAAAGATGAAGAAATTGCGCAAGCAGTTAAGAAAAAACTAGACTTGGAAGAGTATTTGATAAGGTTAGAAGCAGAAAATAGAAAGTGGCAGAAAATGGCACAAGAGAATGAAACAATGGCATTGAGTCTCTACAAAACTTTAGAAGAAATGACAGAAAGAGGCTATTTTTTGAACAATGGGGTGGTGGCAAGTGATGCAGTGTCCTTTTGTGGCGAAACTGGGAGGAAAGAAGAGATACAAGAAGAAGCAACAAGGGAAAACCGTGTAGAATGTTGTGGCGAGTTTGAAGAGATTAGAATGCTTTGTAAAAGCTGTCATTCTAGGAGGTCGTGCTTTCTGTTTCTCCCATGCAGGCACCTTTCTTGCTGCAAAGTTTGTAACTCTTTCCTCGAGGCTTGCCCCGTTTGCAGAACACCAAAGAAGGCTACCATTGAGTTGAGACTCTGA 813 0.3875 MNMGIQAPWYTNNSVSQFCNNDFWAGGLSDSHLNFDQKHHQQQQLSEQHFRELYNLSQGIVQSNLHVHNSKPVNCLMLEKEIDQYIKSQNEELGHMLREHGKQEVRALLKMLECRSLHVLSKKDEEIAQAVKKKLDLEEYLIRLEAENRKWQKMAQENETMALSLYKTLEEMTERGYFLNNGVVASDAVSFCGETGRKEEIQEEATRENRVECCGEFEEIRMLCKSCHSRRSCFLFLPCRHLSCCKVCNSFLEACPVCRTPKKATIELRL 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00357 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 268 IPR013083 -
Cca04g00357 270 Pfam Zinc finger, C3HC4 type (RING finger) 222 263 - -
Cca04g00357 270 ProSiteProfiles Zinc finger RING-type profile. 224 259 IPR001841 -
Cca04g00357 270 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 3 269 IPR017066 -
Cca04g00357 270 PIRSF SBP1_RNase_bind 10 270 IPR017066 -
Cca04g00357 270 SUPERFAMILY RING/U-box 222 263 - -
Cca04g00357 270 Coils Coil 127 147 - -
Cca04g00357 270 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 3 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00357 Cca-Chr4 3488195 3489993 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00357 K19042 - gmx:100813629 374.015