Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00356 ATGGGTGCCCTAGATCACATCTCAGAGCTGTTTGACTGCTCCAACACGAGCTCCAAGCTGAAGAAGAAGAGAAAGCAGTTCCAGACGGTGGAGGTGAAAGTGAAGATGGACTGCGAAGGGTGCGAGAGAAAGGTGAAGAAAGCGGTGGAGGGGATGAAGGGGGTCAGCCAAGTGGAGGTGGATCGCAAAGCCAGCAAGGTAACTGTCTCCGGCTACGTTGAACCCTCCAAGGTCGTCTCACGCATCGCTCACCGCACCGCCAAGAGGGCCGAGCTATGGCCTTACGTCCCCTACGACGTCGTCGCCCACCCCTACGCCCCCGGCGTCTACGACAAGAAAGCTCCCTCTGGTTACGTTCGAAACGCTGAGGTCGACCCTCGCGTCTCCAACCTCGCACGTGCCAGCTCCGCTGAGGTCAGATACACCACCGCCTTCAGCGACGAAAACCCCGCCGCATGTGTCCTTATGTGa 471 0.586 MGALDHISELFDCSNTSSKLKKKRKQFQTVEVKVKMDCEGCERKVKKAVEGMKGVSQVEVDRKASKVTVSGYVEPSKVVSRIAHRTAKRAELWPYVPYDVVAHPYAPGVYDKKAPSGYVRNAEVDPRVSNLARASSAEVRYTTAFSDENPAACVLM 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00356 156 CDD HMA 31 91 IPR006121 GO:0046872
Cca04g00356 156 Pfam Heavy-metal-associated domain 32 82 IPR006121 GO:0046872
Cca04g00356 156 ProSiteProfiles Heavy-metal-associated domain profile. 36 82 IPR006121 GO:0046872
Cca04g00356 156 Gene3D - 12 90 - -
Cca04g00356 156 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 2 156 IPR045181 GO:0046872
Cca04g00356 156 SUPERFAMILY HMA, heavy metal-associated domain 27 84 IPR036163 GO:0046872
Cca04g00356 156 PANTHER HEAVY METAL TRANSPORT/DETOXIFICATION SUPERFAMILY PROTEIN 2 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00356 Cca-Chr4 3468529 3469468 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00356 - K10752 gmx:547973 296.204