Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00355 ATGGCGGAAGAGTACGAAGAGGGTGAAGTTGAGGTGGAGGAAGAGTTCTCCGTTTGGAAGAAGAACACTCCTCTGTTGTACGATCTCTTCATTTCTCACCCTCTTCAATGGCCTTCTCTCACCGTACAATGGGTTCCTTCCTCTACCCAACCCCACTCTCACCCTTCCTTCAATCTCCACAAACTCCTCCTCGCCACTCACACTGCCCAAGGCGAACCCAACTTCCTCATGCTCGTCCACGCTTCACTCCCCGCGGACACGTCCAAACCCATCGTATTCGACGACCCTGACAACCCCGTTCTTCCCAAGGTGGAGATTTCCCAAAGGGTTCCTGTTGACGGGGAGGTAAATCGAGCACGTTGCATGCCGCAGAACCCTAGCACTGTTGCTGCTAAGACGTGTAATTCTGAGGTTTATGTGTTTGATTTTACGAAGCAATATGGGAGCGAGTGTGACCCTGATTTGAGGTTGAGGGGCCACGATAAAGAGGGTTATGGTTTGTCTTGGAGCCCTTTTAAGAACGGGTATCTTTTAAGTGGATCGCATGATCATAAGGTTTGCTTGTGGGACGTGCATGCTGCATCTAAAGAGAATGTGCTTGACGCGCTTCATGTTTATGAGGGTCATGAGAGTGTGGTTGAAGATGTGTCCTGGAATTTGAAGGATGAAAATATGTTTGGGTCTGTTGGAGATGACTGTAAACTGGTCATTTGGGATCTGCGGACATGCAAACCCCAGCACTCGGTTAAATCACATGAAAAAGAGGTAAACTTTATTTCGTTCAATCCATATAATGAATGGATTTTGGCTACAGCATCTTCAGATACAATCGTTGGTCTCTTTGATACACGGAAGCTGGCAGAGCCACTACATGTTTTAAGTAGTCATACAGATGAAGTATTCCAGGTAGAGTGGGATCCTAATCATGAAACTGTGTTGGCATCTTCTGGGGCTGACAGACGGCTGATGGTTTGGGATCTTAACAGGATTGGTGATGAGCAGATAGAGGGAGATGGTGACGGTGGGCCTCCCGAACTACTCTTCTCTCACGGGGGTCACAAAGGAAAAATATCAGATTTTTCATGGAACAAAAACCTGCCATGGGTTATCACAAGTGTAGCTGAGGACAATTCTTTCCATATATGGCAAATGGCAGAGAGCATTTACAATGATGGAGATGACGATGACATATGGACAGCCAATGATTAA 1209 0.4673 MAEEYEEGEVEVEEEFSVWKKNTPLLYDLFISHPLQWPSLTVQWVPSSTQPHSHPSFNLHKLLLATHTAQGEPNFLMLVHASLPADTSKPIVFDDPDNPVLPKVEISQRVPVDGEVNRARCMPQNPSTVAAKTCNSEVYVFDFTKQYGSECDPDLRLRGHDKEGYGLSWSPFKNGYLLSGSHDHKVCLWDVHAASKENVLDALHVYEGHESVVEDVSWNLKDENMFGSVGDDCKLVIWDLRTCKPQHSVKSHEKEVNFISFNPYNEWILATASSDTIVGLFDTRKLAEPLHVLSSHTDEVFQVEWDPNHETVLASSGADRRLMVWDLNRIGDEQIEGDGDGGPPELLFSHGGHKGKISDFSWNKNLPWVITSVAEDNSFHIWQMAESIYNDGDDDDIWTAND 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00355 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 293 328 IPR001680 GO:0005515
Cca04g00355 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 157 199 IPR001680 GO:0005515
Cca04g00355 402 Gene3D - 1 398 IPR015943 GO:0005515
Cca04g00355 402 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI2-RELATED 1 397 - -
Cca04g00355 402 SMART WD40_4 199 239 IPR001680 GO:0005515
Cca04g00355 402 SMART WD40_4 150 190 IPR001680 GO:0005515
Cca04g00355 402 SMART WD40_4 343 383 IPR001680 GO:0005515
Cca04g00355 402 SMART WD40_4 286 326 IPR001680 GO:0005515
Cca04g00355 402 SMART WD40_4 242 282 IPR001680 GO:0005515
Cca04g00355 402 SUPERFAMILY WD40 repeat-like 116 384 IPR036322 GO:0005515
Cca04g00355 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 293 328 - -
Cca04g00355 402 PANTHER WD40 REPEAT FAMILY 1 397 - -
Cca04g00355 402 ProSitePatterns Trp-Asp (WD) repeats signature. 313 327 IPR019775 -
Cca04g00355 402 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 14 84 IPR022052 -
Cca04g00355 402 ProSitePatterns Trp-Asp (WD) repeats signature. 177 191 IPR019775 -
Cca04g00355 402 PRINTS G protein beta WD-40 repeat signature 177 191 IPR020472 -
Cca04g00355 402 PRINTS G protein beta WD-40 repeat signature 269 283 IPR020472 -
Cca04g00355 402 PRINTS G protein beta WD-40 repeat signature 313 327 IPR020472 -
Cca04g00355 402 ProSiteProfiles Trp-Asp (WD) repeats profile. 206 248 IPR001680 GO:0005515
Cca04g00355 402 Pfam WD domain, G-beta repeat 288 326 IPR001680 GO:0005515
Cca04g00355 402 Pfam WD domain, G-beta repeat 157 190 IPR001680 GO:0005515
Cca04g00355 402 Pfam WD domain, G-beta repeat 347 382 IPR001680 GO:0005515
Cca04g00355 402 Pfam WD domain, G-beta repeat 203 239 IPR001680 GO:0005515
Cca04g00355 402 Pfam WD domain, G-beta repeat 244 282 IPR001680 GO:0005515
Cca04g00355 402 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 157 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00355 Cca-Chr4 3463833 3467050 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00355 203 385 Miscellaneous Gene Families AT5G08390 21.311 4.19e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00355 K10752 - gmx:100791834 723.391