Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00353 ATGGCATCCAAGAGAATACTGAAAGAGCTCAAGGACTTACAGAGAGATCCACCAACTTCATGCAGTGCAGGCCCTGTGGGTGAGGACATGTTCCATTGGCAAGCAACCATCATTGGTCCAAATGACAGTCCCTATGCTGGCGGTGTTTTCCTTGTCACCATCCATTTCCCTCCTGATTATCCCTTCAAACCTCCCAAGGTTGCATTCAGGACCAAGGTGTTCCATCCCAACATCAACAGTAATGGCAATATTTGCCTGGACATACTCAAAGAACAGTGGAGTCCTGCTCTCACCATATCCAAGGTGCTTCTCTCCATCTGTTCTCTGCTAACGGATCCAAATCCTGATGACCCTTTGGTGCCTGAAATTGCTCATATGTGCAAGACCGATAAAGTCAAGTACGAGTTCACTGCTAGAAGCTGGACCCAGAAGTCAAGAAACAAGGTTTTCATGCACTACATCCTTGCAATTGTTTTTCACAAATTCCATTTGTTTTCCGTGAAAAAATTATCCATCAATGCTTATAAGAAGCCTGTTGTTGTGGAGTTTTATGATGAGATAGTTTTCCCTGATCCTTCCGAGGCTTTCTTAGCTCGTATGCAAGGTCATCCAGCTGTGAACTTGCCAAGATTACCTGCTGGGCTCACCTTACCTCCTCCCATACCTGTTGAGGATGCAAGTAAAAGGAGAAAAGGTGATACCAAAGATCATTCCTTAAGTCAATGGTTTACAAATTTCTCGGAAGCAGATGAGCTCTTACAGCTTGCAGCAGCTCGTCAGCAGGTACGCTCGCTCATGCTGTTTTATTTCACTCAAAAACACATCTGCCTCCTTACAACATTTAGGTTGTTCTATTTAATATTCCACTATAGTATATGCATATGGTGGTGTGCCAAGTGCTGGGGCATTAGGTTCAAGTTCCAAGCATGA 930 0.4419 MASKRILKELKDLQRDPPTSCSAGPVGEDMFHWQATIIGPNDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKTDKVKYEFTARSWTQKSRNKVFMHYILAIVFHKFHLFSVKKLSINAYKKPVVVEFYDEIVFPDPSEAFLARMQGHPAVNLPRLPAGLTLPPPIPVEDASKRRKGDTKDHSLSQWFTNFSEADELLQLAAARQQVRSLMLFYFTQKHICLLTTFRLFYLIFHYSICIWWCAKCWGIRFKFQA 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00353 309 Pfam Ubiquitin-conjugating enzyme 5 140 IPR000608 -
Cca04g00353 309 SUPERFAMILY UBC-like 2 147 IPR016135 -
Cca04g00353 309 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 157 - -
Cca04g00353 309 SMART ubc_7 4 147 - -
Cca04g00353 309 PANTHER BNAA01G32320D PROTEIN 3 157 - -
Cca04g00353 309 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
Cca04g00353 309 CDD UBCc 3 142 IPR000608 -
Cca04g00353 309 Gene3D Ubiquitin Conjugating Enzyme 1 156 IPR016135 -
Cca04g00353 309 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 147 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00353 Cca-Chr4 3440932 3451260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00353 2 114 Miscellaneous Gene Families AT3G17000 36.975 3.51e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00353 - K06689 gmx:100787053 303.908