Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00351 ATGTCTATTCTCAAACTTGTTTTCGTTACCATCACTGTTTCATTGGCCATTATTGCTGCCAGCGCCCATGACCAGGGTGAAGACGCGAGTATGGCTTCTACGAGCATCGATGATGCAGAGACAAAAGTTGCCGACAAAAACAGGAAGAAGCCTGTCACTTATGATGGCAGGTCACTCATCATCGATGGACAACGAGAGCTTCTCTTCTCCGGTTCCATCCATTACCCGAGAAGCACCCCCGAGATGTGGTCAGAGATTCTTGAAAGAGCAAAGCGTGGAGGTATAAACGTGGTCCAAACTTACGTGTTTTGGAACGTTCATGAGCCTGTGAAGGGCAAGTTCGTAATGGAACCGGAGTATGATTACGTAAAGTTCATAAAGCTCATTCATGAGAAAGACATGTATGTAACCCTCAGGGTTGGCCCTTTCATCCAAGCTGAATGGAATCACGGTGGACTTCCATATTGGCTAAGAGAGATCCCAGAAATCATATTCCGCTCTAACAATGAACCCTTTAAGCTGCACATGAAAGATTACGTATCAAATGTTACAAACACGTTGAAAAAGGAGAATCTCTTTGCTCCCCAAGGAGGTCCCATCATCTTGGCGCAGATTGAGAATGAGTACAACCATATCCAACGTGCTTTTAGAGAGGAAGGAAGCAATTATGTCCAATGGGCTGCAAAAATGGCAGTGTCACTGGATGTTGGAGTTCCATGGATCATGTGCAAGCAAACAGATGCTCCTGATCCAGTGATTAATGCATGCAATGGAAGGCACTGTGGTGATACCTTCGCAGGCCCCAACAAAGCTTACAAGCCTGCCCTATGGACTGAAAACTGGACTGCTCAGTATAGAGTGTTTGGAGATCCACCATCCCAAAGATCAGCAGAAGACATTGCCTTCTCAGTTGCCCGGTTCTTCTCTAAGAATGGGTCTTTGGTGAACTACTATATGTACCACGGTGGAACAAATTTTGGTAGAACAAGCTCTGCCTTCACCACAACCCGGTATTATGATGAAGCCCCTCTCGATGAGTACGGTCTGCAGAGAGAACCAAAATGGAGTCACCTGAGGGATGTGCACAAGGCATTGAACCTATGCAAGAAACCCCTCTTCAATGGTGCGTATTCTGTCACAAAACTGAACCAACATCATGAGATTATAGTTTATGAGAAGGCAGACAGTCATTTATGTGCTGCTTTCATCACTAACAACCACACCAAAACACCAACAACCATAAACTTCAGAGGTACGGATTATTACCTGCCACCACGTTCCATCAGCATCCTCCCTGACTGCAAGACTGTGGTCTTCAACACTCAAAATATTGCTTCACAACATAATTCAAGGAACTTCAAGACGCCAAAGGAATCAAATAATTTTAAGTGGGAGGTGTTTTCTGAGTCCATTCCAACCACCAAGAATATTCCAGTCAACGAAAAGATTCCTGCAGAGCTTTATAACTTGCTTAAAGACGCCAGCGACTATGCATGGTATACCACCAGCGTTGAATTGGGTCCAGAAGACTTGCCAAAGAAGACTGATCTATCCCCCGTTCTTCGTATTCTGAGTCTTGGCCATTCATTACTTGCCTATGTAAATGGAGAATTCGTTGGATCTAATCATGGTAGCCACGAAGAAAAATCTTTTGAATTCCAGAAACCTGTAAAATTCAAGGTTGGAGTTAACGACATAGCTATCTTGGCTTGCACTGTGGGACTCCCCGACAGTGGAGCATACATGGAGCACAGGTTCGCCGGACCCAAGTCTATAACCATCCTTGGTCTGAATTCTGGAAAAATTGATCTGACTAATAATGGTTGGGGTCATAAGGTTGGTATCCAAGGTGAGGAGCTTGCCGTTTTCAGTGAAAAGGGATCAAAGAAGGTAGAGTGGAAAGAGGCCAAGGGACCTGGAAAGACTGTCTCCTGGTACAAGACAAATTTTGCAACCCCAGAGGGAACTGATCCTGTTGCCATCGAGATGAGCGGCATGGGGAAGGGAATGATTTGGGTGAATGGTAAAAGCATTGGTCGTCACTGGATGAGCTACCTCTCTCCTCTTGGAAAGCCTACTCAGTCAGAGTATCACATTCCAAGAACTTACCTCAATCCAAAAGACAACTTGCTTGTTATATTTGAGGAAGAGGTGGCAGATCCAGGAAAGATTACCATCCAAACTGTTGACAGAAATACAGTATGCAGTATCATCACAGAGAATCACCCCGCCAATGTCAAGTCATGGGCAACTAAGAAAGGGAAATTCCAACCTGTTTCGGATAATTTGATGCCAACAGCTGAACTCAGATGTCCACACTTAAGAACCATTAAGACTGTGGAGTTTATAAGCTTTGGTGATCCTGCGGGTTTCTGTGGAGCCTTTGAAATGGGAAAATGTGACGCACCTGGTGCCAGGCAAATCGTCGAAAAGACTTGCCTAGGACAACCATCATGCACAGTTCCATTGGACAAGGCAGCCTTCATTCAGGGCAAAGATCCTTGCTCCAATATCATGAAGACACTTGCAATCCAAGTGAAGTgtgagtga 2550 0.4478 MSILKLVFVTITVSLAIIAASAHDQGEDASMASTSIDDAETKVADKNRKKPVTYDGRSLIIDGQRELLFSGSIHYPRSTPEMWSEILERAKRGGINVVQTYVFWNVHEPVKGKFVMEPEYDYVKFIKLIHEKDMYVTLRVGPFIQAEWNHGGLPYWLREIPEIIFRSNNEPFKLHMKDYVSNVTNTLKKENLFAPQGGPIILAQIENEYNHIQRAFREEGSNYVQWAAKMAVSLDVGVPWIMCKQTDAPDPVINACNGRHCGDTFAGPNKAYKPALWTENWTAQYRVFGDPPSQRSAEDIAFSVARFFSKNGSLVNYYMYHGGTNFGRTSSAFTTTRYYDEAPLDEYGLQREPKWSHLRDVHKALNLCKKPLFNGAYSVTKLNQHHEIIVYEKADSHLCAAFITNNHTKTPTTINFRGTDYYLPPRSISILPDCKTVVFNTQNIASQHNSRNFKTPKESNNFKWEVFSESIPTTKNIPVNEKIPAELYNLLKDASDYAWYTTSVELGPEDLPKKTDLSPVLRILSLGHSLLAYVNGEFVGSNHGSHEEKSFEFQKPVKFKVGVNDIAILACTVGLPDSGAYMEHRFAGPKSITILGLNSGKIDLTNNGWGHKVGIQGEELAVFSEKGSKKVEWKEAKGPGKTVSWYKTNFATPEGTDPVAIEMSGMGKGMIWVNGKSIGRHWMSYLSPLGKPTQSEYHIPRTYLNPKDNLLVIFEEEVADPGKITIQTVDRNTVCSIITENHPANVKSWATKKGKFQPVSDNLMPTAELRCPHLRTIKTVEFISFGDPAGFCGAFEMGKCDAPGARQIVEKTCLGQPSCTVPLDKAAFIQGKDPCSNIMKTLAIQVKCE 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00351 849 Gene3D - 611 741 - -
Cca04g00351 849 Pfam Beta-sandwich domain in beta galactosidase 372 444 IPR041392 -
Cca04g00351 849 Gene3D - 443 583 - -
Cca04g00351 849 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 197 209 IPR019801 GO:0004553|GO:0005975
Cca04g00351 849 Gene3D - 762 849 IPR043159 -
Cca04g00351 849 ProSiteProfiles SUEL-type lectin domain profile. 765 849 IPR000922 GO:0030246
Cca04g00351 849 PANTHER BETA-GALACTOSIDASE RELATED 39 845 IPR001944 GO:0004553|GO:0005975
Cca04g00351 849 SUPERFAMILY Galactose-binding domain-like 607 755 IPR008979 -
Cca04g00351 849 Pfam Galactose binding lectin domain 769 848 IPR000922 GO:0030246
Cca04g00351 849 Gene3D Glycosidases 48 368 - -
Cca04g00351 849 SUPERFAMILY Galactose-binding domain-like 428 589 IPR008979 -
Cca04g00351 849 PRINTS Glycosyl hydrolase family 35 signature 62 79 IPR001944 GO:0004553|GO:0005975
Cca04g00351 849 PRINTS Glycosyl hydrolase family 35 signature 83 101 IPR001944 GO:0004553|GO:0005975
Cca04g00351 849 PRINTS Glycosyl hydrolase family 35 signature 138 157 IPR001944 GO:0004553|GO:0005975
Cca04g00351 849 PRINTS Glycosyl hydrolase family 35 signature 195 210 IPR001944 GO:0004553|GO:0005975
Cca04g00351 849 PRINTS Glycosyl hydrolase family 35 signature 276 291 IPR001944 GO:0004553|GO:0005975
Cca04g00351 849 PRINTS Glycosyl hydrolase family 35 signature 313 328 IPR001944 GO:0004553|GO:0005975
Cca04g00351 849 PRINTS Glycosyl hydrolase family 35 signature 332 348 IPR001944 GO:0004553|GO:0005975
Cca04g00351 849 PRINTS Glycosyl hydrolase family 35 signature 641 655 IPR001944 GO:0004553|GO:0005975
Cca04g00351 849 PRINTS Glycosyl hydrolase family 35 signature 668 684 IPR001944 GO:0004553|GO:0005975
Cca04g00351 849 PANTHER GLYCOSIDE HYDROLASE FAMILY 35 PROTEIN 39 845 - -
Cca04g00351 849 Pfam Glycosyl hydrolases family 35 58 364 IPR031330 -
Cca04g00351 849 Pfam Beta-galactosidase jelly roll domain 631 713 IPR025300 -
Cca04g00351 849 SUPERFAMILY (Trans)glycosidases 52 368 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00351 Cca-Chr4 3421109 3426845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00351 32 848 Glycoside Hydrolase AT2G16730 59.196 0.0 1031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00351 - - gmx:100780092 1422.53