Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00350 ATGGAAACTCGGAGCCGGAAGCGGGCGGAGGCTTCCTCAACTGCCCCTTCATCATCTTCCTCTGGTCCCACCACTCGCTCCAGCAAGCGCGCGCGTCTCTCTTCTTCTTCCACCGCCACCGCCGCCTCTCTTTCTTCCGTCAACACTCGTTCCCGTCCATCTAAACCTAAGGAGCCCGCACCTCCCAAGAATCTCCCTCCCATGGACCCTACAAATGAATCCTCTGCTTCGCGCCGTGATCGCCGCAACAAGGAAAATTCCGATAAGGGTAAGGAGAAAGAGCATGATGTTAGAATTAGGGATAGGGATTCGGACCGAGGGTTGGCTTTGAACATGGACGTTGGCGAGGATGACGATAACGACAGCGAGGGTGGTGTTGGAATTTTGCACCAGAATTTGTCTTCCGCGAGTAGTGCACTTCAGGGGCTTCTTAGAAAGCTTGGTGCAGGTTTGGATGATCTGCTTCCGTCTTCGGCTATGGGTTCTGCGTCTTCCTCTCATCAGAGTGGGAGGCTGAAGAAGATCCTGTTTGGGTTGAGGGCTGATAGTGAAGAAGGGAGGCAGGTTGAAGCATTGACGCAGCTGTGTGAAATGCTTTCAATTGGAACCGAGGAATCGCTTAGTACGTTCTCTGTTGATGCCTTTGTTCCCGTGCTTGTGGGGTTGTTGAATCACGAGAGCAATCCCGACATAATGCTTCTTGCGGCCAGAGCGTTAACTCATTTATGTGATGTGCTTCCGTCATCTTGTGCTGCTGTTGTGCATTATGGTGCAGTGTCAATCTTCTGTGCCAGGTTGCTCACCATAGAGTACATGGATTTGGCTGAACAGTCTCTTCAAGCTCTAAAGAAGATATCTCAAGAGCACCCCACTGCCTGCCTACGAGCAGGTGCTCTTATGGCCGTCCTTTCTTATTTGGACTTCTTTTCAACAGGAGTTCAGCGTGTTGCTTTGTCTACCGCTGCAAATATGTGCAAGAAGCTTCCTTCAGATGCAGCTGATTTTGTGATGGAAGCTGTTCCTCTGCTGACTAACCTTCTTCAGTACCATGATTCCAAGGTTCTGGAGCATGCATCTGTTTGTTTGACTCGAATAGCTGAAGCATTTGCATCATCTCCAGACAAATTAGATGAACTGTGCAACCATGGACTGGTAACACAAGCTGCCTCCCTCATTTCCAACAGCAGTTCTGGAGGTGGTCAGGCTTCTCTCAGCACACCAACATATACCGGATTAATCCGACTCCTTTCAACTTGTGCGAGTGGATCCCCTCTTGGAGCTAAAACTTTGCTACTTCTCGGAATTAGTGGTATTCTCAAAGATATTCTATCTGGTTCCGGAGTTTCTTCTAATGCCTCTGTTTCTCCTGCATTAAGTAGGCCACCAGAGCAGATATATGAGATTGTAAACCTGGCAAATGAGCTTCTGCCTCCATTGCCACACGGAACAATTTCTCTCCCTATCATCTCCAACATGTTTTTGAAAGGGCCAATTGTAAGAAAGTCTCCTGCTGGTAGCTCTGGGAAACAAGAAGACACAAATGGAAATGTTCCTGAGATATCGGCTCGGGAGAAACTATTAAATGATCAGCCTGAACTACTTAAGCAATTTGCGATGGATCTCCTCCCAGTTTTAATACAGATATATGGTTCTAGTGTCAATGGTCCTGTTCGGCACAAATGTCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCAGAGATGATCCAGTCTTTGTTGAGTGTGACAAATGTATCAAGTTTCTTAGCTGGTGTCCTAGCATGGAAAGATCCACACGTTTTGGTTCCTGCCTTGAAAATTGCTGAAATTCTTATGGAAAAGCTTCCTGGGACATTCTCCAAGATGTTCATTAGAGAAGGTGTTGTGCATGCAGTGGACCAACTTATTTTAGCCGGGAATTCAACCAGTATCTCTACACAGGCATCTTCTGCTGAGAAGGATAATGATTCTATATCTGGAGCATCGTCTCGGTCTAGGCGTTATCGGCGGCGCAGTGGGAATTCCAATCCTGAAGGAAATCCTTTGGATGATTCAAAGGCTCCGGTTTTGGTTAATGTTGGTTCACCTCCCAGTACTGTGGATATTCCAACAGTAAATACTAGTATTCGGTTATCTGTTAGTACAGCTGCTAAAGCTTTTAAAGATAAGTACTTTCCTTCAGATCCTGGGGCTGCTGAAGTGGGTATTACTGAAGATCTTTTGCATCTGAAAAATCTTTGCATGAAGTTAAATGCTGGTGCTGATGATCATAGGACTAATGGAAAGGGGAAATCTAAAACTTCTGGATTTGGTCAGGAAGAATATTTAATAGGGGTCATAGCTGACATGCTAAAGGAGCTTGGCAAAGGAGATGGTGTATCTACTTTTGAATTTATTGGTAGTGGTGTTGTTGCAGCTTTGTTGAATTATTTTTCTTGCGGGTATTTCTCTAAAGATCGACCCTCGGAAACCCACCTTCCCAAGCTTCGCCAACAAGCGCTTACAAGGTTTAAGTTATTTATAGCTGTTGCGCTACCTTCCTCTACTGAGTATGGGACCGTGACTCCTATGTCTGTTTTGGTCCAGAAGCTTCAAAATGCTTTGTCCTCCTTGGAGCGTTTCCCTGTTGTGCTGAGTCATTCATCTAGGTCATCCAGTGGGAGTGCACGCCTCTCCTCTGGACTAAGTGCATTATCTCAGCCGTTCAAGTTGCGGCTTTGTCGAGCCCAGGGTGATAAGTCACTTAGGGATTATTCATCCAATGTTGTACTGGTTGATCCGTTAGCAAGTTTAGCAGCCATTGAGGAATTTCTTTGGCCTCGTATCCAACGAAGTGAATCTGGTCAGAAGTCCACTGTACCTGCTGGAAATTCTGAATCTGGGACAACTCCTGCAGGAGCTGGGGTATCCTCTCCTTCCACTACCCGTCGCCATTCTACTAGATCCAGATCATCTGTTAATATAGGTGATACATCCAGAAAAGAAATTGCTCAAGATAAAAGCACAAGCTCTTCTAAGGGCAAGGGAAAAGCTGTATTAAAGCCTGCACAAGAGGAGGCAAGAGGACCTCAAACCAGGAATGCTACTCGCAGAAGAGCAGCTCTTGATAAAGATGCACAGATAAATCCTGTAAATGGTGACTCTACTTCCGAGGATGAAGATTTGGATATATCTCCTGTTGAGATTGACGAGGCATtggtgattgaagatgatgatatttctgatgatgaagatgatgatgaccaagaagatGTACTGAGGGATGATTCGCTTCCTGTTTGCTCACCTGACAAAGTACATGATGTGAAATTGGGCGATTTAGCTGAAGAGAGTGCTGTAGCTCCTGCAACAAGTGATGGTCCGACTAATGCCGCCTCAGGTTCTAGCAGCAAGGCTGGTACAGTCAGGGGTTCAGACTCTGCTGATTTTAGGAGTGGCTATACTTCAAGCTCAAGAGGTGCAATGTCATTTGCTGCTGCTGCCATGGCTGGACTTGGATCTGCCAATAGCAGAGGCTTCAGGGGTGGAAGAGATCGACTAGGGCGTCCTTTGTTTGGTAGTTCTAATGATCCTCCAAAGTTGATCTTTACTGCTAGTGGGAAGCAGCTTAATAGGCATTTGACTATATATCAGGCAATTCAACGACAGCTTGTGCTAGATGAAGATGATGATGAGAGATTTGCTGGTAGTAGTGACTATGTATCCAGTGATGGAAGTAGGTTGTGGGGTGATATTTATACTATAACTTATCAGAGGGCAGAGAACCAAACTGATAGGGCTCCCCCTGGAGGTTCAAACTCTAATGCTTCAAAGTCTGGCAAATCTGGTTCTGCATTGAATTCTAGTTCTGAAGGCAAGCTACATCAGATATCTGTATTAGATAGTATCTTGCAGGGAGAATTGCCCTGTGAACTGGAGAAATCTAATCCTACATACAATATATTGGCATTATTGCGGGTGCTAGAGGGCCTGAACCAACTTGCATCTCGTTTGAGGGCCCAAGTGATTACTGATAACTTTGCAGAGGGGAAAATTTTGGATTTAGATGAACTAAGTGTTACCAGCAGTGCTAGGGTTCCTGCAGAGGAATTTATAAGCAGCAAACTTACTCCAAAATTAGCTAGGCAAATACAAGATGCCCTTGCCTTGTGCAGTGGGAGTCTTCCCTCATGGTGTTACCAGTTAACTAAGGCATGCCCTTTTTTGTTTCCTTTTGAGACACGGCGACAGTACTTCTATTCAACTGCCTTTGGGCTATCTCGTGCACTGTATCGCCTTCAGCAGCAGCAGGGTGCTGATGGTCATGGATTAACAAATGAAAGAGAGATCAGGGTTGGGAGATTGCAGCGCCAAAAGGTTCGTGTCTCTCGAAATCGTATTTTGGATTCTGCTGCTAAAGTGATGGAGTTGTATTCTAGTCAAAAAGCTGTACTTGAAGTAGAATATTTTGGTGAAGTTGGCACTGGTCTGGGTCCCACTCTGGAGTTCTACACACTTCTCAGTCATGACTTACAAAAAGTTGTACATCAAATGTGGAGATCAGGTTCTTCAGAGAAATATGAAATGGAAGTTGATGGAGATGAAAAGAAAATGAAAAGTAGTGAAGGCTCTTTTGTTGGAGATGGAGAACTTGTTCAAGCTCCTCTTGGGTTGTTTCCTCGACCTTGGCCTGCAAATGTTGATGCATCTGAGGGTACTCAATTTTCTAAAGTGATCGAATATTTCCGGCTATTAGGCCGTGTAATGGCTAAAGCTCTTCAAGATGGACGCCTATTGGATTTACCATTGTCAATGGCGCTTTATAAGCTTATTCTTGGTCAAGAGCTTGATTTGCATGACATTCTTTTCATTGATGCTGAGCTTGGGAAAACTTTACAAGAGTTTAATGCCCTTGTTTGCCGGAAGCGTTATATAGAATCTATTGGTGGTAGCGATACTGATACAATTGCTAATTTGCATTTTCGTGGGGCCCCAATTGAAGATATCTGCTTGGACTTCACACTTCCTGGTTATCCAGATTACATCTTGAAACCTGGAGATAAAATTGTTGACATCAATAATCTAGAGGAATACATATCAATGGTGGTTGATGCAACTGTTAAGACTGGAATCATGCGTCAAATGGAAGGATTTAGAGCAGGGTTCAATCAGGTTTTTGACATCTCATCTTTACAAATTTTTACTCCCCAAGAACTGGATTACCTGCTTTGTGGCCGTAGAGAATTGTGGAAGACTGAGACACTGGCGGATCATATAAAATTTGACCATGGTTACACTGCCAAGAGCCCTGCCATAGTTAATTTGCTTGAAATTATGGGAGAATTCACACCAGAGCAGCAGCGTGCCTTCTGTCAATTTGTTACTGGTGCACCTAGGCTGCCACCTGGTGGACTGGCAGTTCTAAATCCAAAACTAACTATAGTGAGGAAGCTTTCGTCAAGTGCAGCTAATGTTTCATCGAATGGGAATGGGCCTTCAGAATCGGCTGACGATGACTTGCCAAGTGTGATGACTTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAGGAAATTATGTACAAGAAGCTACTTTATGCAATCAATGAAGGCCAGGGATCCTTTGATTTATCATGA 5622 0.4422 METRSRKRAEASSTAPSSSSSGPTTRSSKRARLSSSSTATAASLSSVNTRSRPSKPKEPAPPKNLPPMDPTNESSASRRDRRNKENSDKGKEKEHDVRIRDRDSDRGLALNMDVGEDDDNDSEGGVGILHQNLSSASSALQGLLRKLGAGLDDLLPSSAMGSASSSHQSGRLKKILFGLRADSEEGRQVEALTQLCEMLSIGTEESLSTFSVDAFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISNSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSNASVSPALSRPPEQIYEIVNLANELLPPLPHGTISLPIISNMFLKGPIVRKSPAGSSGKQEDTNGNVPEISAREKLLNDQPELLKQFAMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNVSSFLAGVLAWKDPHVLVPALKIAEILMEKLPGTFSKMFIREGVVHAVDQLILAGNSTSISTQASSAEKDNDSISGASSRSRRYRRRSGNSNPEGNPLDDSKAPVLVNVGSPPSTVDIPTVNTSIRLSVSTAAKAFKDKYFPSDPGAAEVGITEDLLHLKNLCMKLNAGADDHRTNGKGKSKTSGFGQEEYLIGVIADMLKELGKGDGVSTFEFIGSGVVAALLNYFSCGYFSKDRPSETHLPKLRQQALTRFKLFIAVALPSSTEYGTVTPMSVLVQKLQNALSSLERFPVVLSHSSRSSSGSARLSSGLSALSQPFKLRLCRAQGDKSLRDYSSNVVLVDPLASLAAIEEFLWPRIQRSESGQKSTVPAGNSESGTTPAGAGVSSPSTTRRHSTRSRSSVNIGDTSRKEIAQDKSTSSSKGKGKAVLKPAQEEARGPQTRNATRRRAALDKDAQINPVNGDSTSEDEDLDISPVEIDEALVIEDDDISDDEDDDDQEDVLRDDSLPVCSPDKVHDVKLGDLAEESAVAPATSDGPTNAASGSSSKAGTVRGSDSADFRSGYTSSSRGAMSFAAAAMAGLGSANSRGFRGGRDRLGRPLFGSSNDPPKLIFTASGKQLNRHLTIYQAIQRQLVLDEDDDERFAGSSDYVSSDGSRLWGDIYTITYQRAENQTDRAPPGGSNSNASKSGKSGSALNSSSEGKLHQISVLDSILQGELPCELEKSNPTYNILALLRVLEGLNQLASRLRAQVITDNFAEGKILDLDELSVTSSARVPAEEFISSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGLTNEREIRVGRLQRQKVRVSRNRILDSAAKVMELYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVVHQMWRSGSSEKYEMEVDGDEKKMKSSEGSFVGDGELVQAPLGLFPRPWPANVDASEGTQFSKVIEYFRLLGRVMAKALQDGRLLDLPLSMALYKLILGQELDLHDILFIDAELGKTLQEFNALVCRKRYIESIGGSDTDTIANLHFRGAPIEDICLDFTLPGYPDYILKPGDKIVDINNLEEYISMVVDATVKTGIMRQMEGFRAGFNQVFDISSLQIFTPQELDYLLCGRRELWKTETLADHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSSAANVSSNGNGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00350 1873 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 43 1873 IPR045322 GO:0006511|GO:0061630
Cca04g00350 1873 MobiDBLite consensus disorder prediction 1117 1147 - -
Cca04g00350 1873 Pfam HECT-domain (ubiquitin-transferase) 1500 1873 IPR000569 GO:0004842
Cca04g00350 1873 MobiDBLite consensus disorder prediction 946 1100 - -
Cca04g00350 1873 MobiDBLite consensus disorder prediction 1113 1147 - -
Cca04g00350 1873 MobiDBLite consensus disorder prediction 10 53 - -
Cca04g00350 1873 MobiDBLite consensus disorder prediction 647 689 - -
Cca04g00350 1873 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 43 1873 - -
Cca04g00350 1873 MobiDBLite consensus disorder prediction 946 993 - -
Cca04g00350 1873 MobiDBLite consensus disorder prediction 1254 1284 - -
Cca04g00350 1873 MobiDBLite consensus disorder prediction 74 113 - -
Cca04g00350 1873 MobiDBLite consensus disorder prediction 1050 1087 - -
Cca04g00350 1873 MobiDBLite consensus disorder prediction 1 125 - -
Cca04g00350 1873 CDD HECTc 1452 1868 IPR000569 GO:0004842
Cca04g00350 1873 SMART arm_5 203 244 IPR000225 GO:0005515
Cca04g00350 1873 SMART arm_5 286 326 IPR000225 GO:0005515
Cca04g00350 1873 SMART arm_5 329 367 IPR000225 GO:0005515
Cca04g00350 1873 MobiDBLite consensus disorder prediction 1169 1189 - -
Cca04g00350 1873 ProSiteProfiles HECT domain profile. 1573 1873 IPR000569 GO:0004842
Cca04g00350 1873 MobiDBLite consensus disorder prediction 647 663 - -
Cca04g00350 1873 SMART hect_3 1463 1873 IPR000569 GO:0004842
Cca04g00350 1873 Gene3D Hect, E3 ligase catalytic domains 1392 1635 - -
Cca04g00350 1873 SUPERFAMILY ARM repeat 172 640 IPR016024 -
Cca04g00350 1873 SUPERFAMILY Hect, E3 ligase catalytic domain 1444 1866 IPR035983 GO:0004842
Cca04g00350 1873 Gene3D Hect, E3 ligase catalytic domain 1745 1871 - -
Cca04g00350 1873 Gene3D - 179 652 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00350 Cca-Chr4 3407620 3418559 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00350 K10590 - gmx:100783336 3216.02