Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00349 ATGGGTTTCTTCAGTACCATTTTGGGGTTTTTCGGATTTGGGGTTGGGATTTCGATTGGTCTTGTGGCCGGCTATTTTCTCTTTATCTACTTTCAACCCACCAATGTTGAGGATCCTGAAATCAAGCCACTGGTGGAGCACGACCAAGAGACTTTGCAACAAATGTTTCCGGAGATACCACTCTGGATAAAGAATCCGGACTTTGATCGGCTTGACTGGCTGAACAGGTTTTTAGAATATATGTGGCCGTATCTTGATAAGGCAATTTGCAAGACTGCGAGGAACATTGCAAAACCCATTATCGCTGAGCAGATTCCTAAATATAAAATTGATTCGGTCGAGTTTGAAACACTCACACTGGGGTCTCTGCCGCCAACTTTTCAAGGAATGAAGGTTTATGTGACTGATGAGAAGGAGTTAATTATGGAGCCTTCTGTAAAATGGGCTGGAAATCCTAATGTCACTATTTCTGTTAAGGCCTTTGGGTTGAAAGCAACTGTGCAGGTTGTGGATTTGCAAGTTTTCCTTTTGCCTCGTATTACTTTGAAGCCTTTGGTTCCTAGCTTTCCTTGCTTTGCCAACATATATGTCTCTCTCATGGAAAAGCCACATGTTGACTTTGGACTAAAGCTCATAGGGGCTGATCTTATGTCTATTCCGGGCATCTATAGGATTGTTCAGGAGCTTATCAAAGATCAAGTTGCAAACATGTATCTTTGGCCCAAAACCTTGGAGGTTCCAATATTAGATATGTCAAAAGCCTTGAAGAGGCCCGTTGGAATTTTACATGTAAAGGTTCTGCATGCAATGAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCCGATCCTTATGTGAAGCTAAAGCTTTCTGAGGATAAATTGCCATCGAAAAAGACTACTGTGAAGCACAAGAACTTAAATCCTGAATGGAATGAAGAATTCAATATGGTTGTTAAAGATCCAGAATCCCAGGTTTTAGAGATTAATGTTTATGACTGGGAGCAGGTTGGGAAGCATGACAAGATGGGTATGAATGTGATTCCTTTAAAAGAAGTTTCCCCCGAAGAGCCTAAACGTTTCACTCTTGATCTCCTAAAAAATATGGATCCCAATGATGTCCAAAATGAGAAGTCACGAGGGCAGATTGTTGTAGAATTGACATATAAACCCTTCAAGGAGGAGGATTTGGGCAAGGGGTTTGAAGAGACACAGACAGTTCCAAAAGCTCCAGAAGGTACTCCAGCTGGTGGAGGTTTGCTTGTAGTTATAGTCCATGAAGCTCAAGATGTTGAAGGAAAGTATCACACTAATCCACATGTACGCCTTATTTTCAGAGGGGAGGAGAAAAAAACTAAGCGCATTAAAAAGAACAGAGATCCAAGATGGGAAGACGAATTCCATTTTACGGTGGAGGAGCCTCCCACCAATGATAGATTACATGTGGAGGTTGTCAGCACTTCGTCACGAAACCTGCTCCACCAAAAGGAATCATTGGGTTATATCGACATCAATCTTGGGGATGTTGTCGCCAACAAAAGAATTAACGAGAAGTATCATCTTATTGACTCCAAGAATGGTCGCCTCCAGATAGAGTTGCAGTGGAGAACCTCGGAAGCATGA 1620 0.4191 MGFFSTILGFFGFGVGISIGLVAGYFLFIYFQPTNVEDPEIKPLVEHDQETLQQMFPEIPLWIKNPDFDRLDWLNRFLEYMWPYLDKAICKTARNIAKPIIAEQIPKYKIDSVEFETLTLGSLPPTFQGMKVYVTDEKELIMEPSVKWAGNPNVTISVKAFGLKATVQVVDLQVFLLPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLIGADLMSIPGIYRIVQELIKDQVANMYLWPKTLEVPILDMSKALKRPVGILHVKVLHAMKLKKKDLLGASDPYVKLKLSEDKLPSKKTTVKHKNLNPEWNEEFNMVVKDPESQVLEINVYDWEQVGKHDKMGMNVIPLKEVSPEEPKRFTLDLLKNMDPNDVQNEKSRGQIVVELTYKPFKEEDLGKGFEETQTVPKAPEGTPAGGGLLVVIVHEAQDVEGKYHTNPHVRLIFRGEEKKTKRIKKNRDPRWEDEFHFTVEEPPTNDRLHVEVVSTSSRNLLHQKESLGYIDINLGDVVANKRINEKYHLIDSKNGRLQIELQWRTSEA 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00349 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 393 IPR035892 -
Cca04g00349 539 Pfam C2 domain 260 359 IPR000008 -
Cca04g00349 539 Pfam C2 domain 419 520 IPR000008 -
Cca04g00349 539 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 536 IPR045050 GO:0008289
Cca04g00349 539 CDD C2 262 364 - -
Cca04g00349 539 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 536 - -
Cca04g00349 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 535 IPR035892 -
Cca04g00349 539 SMART C2_3c 419 517 IPR000008 -
Cca04g00349 539 SMART C2_3c 261 361 IPR000008 -
Cca04g00349 539 Gene3D C2 domain 419 537 IPR035892 -
Cca04g00349 539 PRINTS C2 domain signature 277 289 IPR000008 -
Cca04g00349 539 PRINTS C2 domain signature 304 317 IPR000008 -
Cca04g00349 539 PRINTS C2 domain signature 326 334 IPR000008 -
Cca04g00349 539 ProSiteProfiles C2 domain profile. 399 518 IPR000008 -
Cca04g00349 539 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Cca04g00349 539 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Cca04g00349 539 Gene3D C2 domain 256 409 IPR035892 -
Cca04g00349 539 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00349 Cca-Chr4 3384210 3394013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00349 255 516 Lipid Metabolism Gene Families AT3G61300 27.941 4.18e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00349 - - gmx:100803978 1050.04