Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00343 ATGTCTTCTTTCTACCCACGAGTCGATTCAACAAACCAAGACGCCAATTCCCCACTCTCGCATCCTTCACCATCATCTTCTTCAATGTATCCCTCGCTCGACACAGAGCCAAGCACGTCAACAACGCAAGCCATGGAAACCGTTCTCGTAACCGTCCCGGGCGCGATTCTTCATCTGATAGAAAAGGACTCCAGCGTCCACCTCGCTTCCGGCGACCTCACCGTGGCCAGCATCGGCGAAGGCGAAAAAGTGGTGGCGGTGCTGGCCCGCGTGGGCGACGAGGTCCAGTGGCCGCTGGCGAAGGACGTGTCAGCGGTGAAACTTGACGCGTCGCACTACTTCTTCACGGTGCGGGTCCCACAGAAGGAGGAGTTGGAAGTTTTGAACTACGGTTTGACGGTGGCGGCGAAGGGGCAGGAGAGGGTGCTGAGGGAACTTGAGGAGGTTCTTGAGAAGTACTGCTTTGTGTCgaaggagagagtgaagggcgtgggagggtgggaggtgatggacggTTCGGTGTCGGCGGAGACTTCGCCggaggagttgaggtcggaggagaagagggaggcggtggaggagCTTTCGGGCGCTTACTGGACGACGCTGGCGCCGAACGTGGAGGATTACAGCGGGCGTTTCGCGAGGTGGATTGCGGCGGGGTCGGGGCAGGTGGTGAGGGGTATATTGTGGGTTGGGGATGTGACTGTGGAGAGGTTGAAGTGGGGGAATGATTACTTGAAGAAGAGGTTGGACCCTGCTTCCCACTCTCAGATTAGTCCTCAGGCGTTGGAGAGGATCGTAAGGGTTAAGAAGTTGACCAAGATGTCAGAGAACGTTGCCAACGGTGTCCTCTCTGGGGTGGTTAAGGTCTCTGGATTCTTCACAACTTCTTTAGTCAACTCCAAAGCGGGCAAGAAATTCTTCAGCCTTCTTCCGGGGGAAATCGTCCTTGCTACCTTGGATGGATTCAATAAGGTCTGTGATGCTGTAGAAGTAGCTGGAAGGAATGTCATGTCCACTTCCTCAGTTGTGACAACCGGACTCGTTTCACATAAATATGGAGAGCAAGCAGCTGAGGCTACAAATGAAGGCCTTGACGCTGCAGGGCATGCGATTGGGACTGCTTGGGCCGTGTTCAAACTTAGGAAGGCACTCAACCCGAAGAGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGAGCGTCATCAAACCAACAACACTAG 1290 0.4698 MSSFYPRVDSTNQDANSPLSHPSPSSSSMYPSLDTEPSTSTTQAMETVLVTVPGAILHLIEKDSSVHLASGDLTVASIGEGEKVVAVLARVGDEVQWPLAKDVSAVKLDASHYFFTVRVPQKEELEVLNYGLTVAAKGQERVLRELEEVLEKYCFVSKERVKGVGGWEVMDGSVSAETSPEELRSEEKREAVEELSGAYWTTLAPNVEDYSGRFARWIAAGSGQVVRGILWVGDVTVERLKWGNDYLKKRLDPASHSQISPQALERIVRVKKLTKMSENVANGVLSGVVKVSGFFTTSLVNSKAGKKFFSLLPGEIVLATLDGFNKVCDAVEVAGRNVMSTSSVVTTGLVSHKYGEQAAEATNEGLDAAGHAIGTAWAVFKLRKALNPKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASSNQQH 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00343 429 PANTHER OS06G0717100 PROTEIN 3 392 - -
Cca04g00343 429 Coils Coil 422 422 - -
Cca04g00343 429 MobiDBLite consensus disorder prediction 1 44 - -
Cca04g00343 429 Pfam Senescence domain 216 385 IPR009686 -
Cca04g00343 429 PANTHER SPARTIN 3 392 IPR045036 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00343 Cca-Chr4 3332994 3334880 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00343 K19366 - gmx:100802385 604.749