Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca04g00341 | ATGGCGATGGCTTTCAAAATGGCGACTACTGGGATGTGGGTGACGGATGAGTGCAAGAACTCTTTCATGGAAATGAAGTGGAAGAAGGTGCACAGATACATAGTGTTCAAGATCGATGAAAGGTCCAGGCTTGTCACCGTTGATAAGGTGGGTGGTCCCGGTGAGAGCTATGATAATCTCGCTGCCTCCTTGCCCAAGGATGATTGTAGATATGCCGTCTTCGACTTTGATTTTGTCACCGTTGATAATTGCCACAAGAGCAAGATCTTCTTCATTGCATGGTACTCACATCTCATCAATTTATCCATATCGCATCCTTCTACCGTGCTTACACTCCCCCACGTTTCACTCTCACGATGA | 360 | 0.4639 | MAMAFKMATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDERSRLVTVDKVGGPGESYDNLAASLPKDDCRYAVFDFDFVTVDNCHKSKIFFIAWYSHLINLSISHPSTVLTLPHVSLSR | 119 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca04g00341 | 119 | Pfam | Cofilin/tropomyosin-type actin-binding protein | 18 | 95 | IPR002108 | GO:0003779 | |
| Cca04g00341 | 119 | Gene3D | Severin | 6 | 109 | IPR029006 | - | |
| Cca04g00341 | 119 | SMART | adf_2 | 16 | 119 | IPR002108 | GO:0003779 | |
| Cca04g00341 | 119 | PANTHER | COFILIN-RELATED | 5 | 95 | IPR017904 | GO:0015629|GO:0030042 | |
| Cca04g00341 | 119 | PANTHER | ACTIN DEPOLYMERIZING FACTOR 5-RELATED | 5 | 95 | - | - | |
| Cca04g00341 | 119 | CDD | ADF_cofilin_like | 10 | 94 | IPR017904 | GO:0015629|GO:0030042 | |
| Cca04g00341 | 119 | SUPERFAMILY | Actin depolymerizing proteins | 6 | 96 | - | - | |
| Cca04g00341 | 119 | ProSiteProfiles | ADF-H domain profile. | 11 | 119 | IPR002108 | GO:0003779 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca04g00341 | Cca-Chr4 | 3310215 | 3311119 | Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca04g00341 | K05765 | - | tcc:18607566 | 193.356 |