Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00339 ATGGGAAGTAGAGAGGATCCGAATCCCATAAGCAACGAGTCGTcagcaacagcaacagcaacagcaacagcaacagAACCCTTTCTATCATCTTCTACGGCAGTGGAAGAAGAATCGGAGTCAAACCAGCAATACCTTCACATCACTTACAATTCAGGCCCTCGCTCCTTCAAGGACcttcctttcctcatcctcttcctcctcttcctcctctccaccttcgccttcGGCATCTTCGCAATCGTCCACCGCAACACCGCCTCCTCCTGCGTAAACCCTTCCTCCACTCccctctccctctccctctccctctccctcCGCTCCTTCCCTCACTGGGCCAAGGCCCTCACATGGACGCTCCTCATCACTTTCCTCCTCAGCCTCCCCCTTTGCTGGGCGCTGCTCCTCTCTCTCAACCATTACACCAAACACATTGTCTACGCTTCGCTCCCCTTCTTCATTCTCATCCCCATCTTCCTCAACGTCTACTGGTTCGTCGCCTGCACCCTCCGCTCCTCCTGCACCCACGCCTTCCCCCTCGCCTACCGGATTCTCCTCATGCTCTTCGTCTTCTTGCTTATTGGGATCATCGTCTGGATCTTGGTCGTCAATTGGCACCGCCTCGAGCTCACTGTCAGCATAATTGGGGTCGCTTCTAACGCGCTTTCCAGGAATTTTACCCTCTTCGGGGTGCTTCCTTCTATGACCATTGGCCTGCTGCTGTATTATGTGCCAATCATCCTTTTCATGGTCTTTGCCAAGTTTAATGGGAAGCTTGTGGTGAAGGAATTGGAGGGTCAATATGATTGTGTTTGGAAGGAGGATTCCTGGGTCCCTGCTTATTTTGCGTTGGCTATTCTCACCATGTTGTGGTCTGCGGCTGCTATGGTTGAAGCTCAGGTTTATGTCATTAGTGGGACTATTGCTAATTGGTACTTCTCCAAGGATTATCAAGCTCCTAAGCGGAGTATTCGAACTTCTCTTAGAAATGCTTTTGGTCCTTCTTCTGGCACGATATGTTTGTCGGGATTACTTATCTGTGTTGTTCGAATGGTGCGTTCTGCGGTTGATAGTGCAAGACAAGAGGATACTCCTGGGATAGTGAACCTTGTGTTACGGTGCTGCGTAAATGCCTTACTGACAGCAGTTGATTTTCTCAACAAGTTTACTATAAACTTTGCTGCAATAACTGGTGAAGCTTACTGCTCTTCTGCAAGGATGACATATGAACTTCTAAGACGTAATCTTCTCTCTGCTGTTTTCGTGGAGACCATCTCATCTCGCCTCCTGGCTGGAATTGTCTTTGTCCTCTCTGCAATATACACAATTGTGGTCTGTGCTATCTTAAAAGCTGGTACCAATCTGGGGGCTGATTCATATTTTGTGGCTGCAATGGCATGGGTGCTACTGATAGTAGTGCTGGGTTACTTCGTGCATGTGCTAGACAATGTGATCGACACAATTTATGTCTGCTATGCGATAGACCGGGATAGAGGAGAGGTTTGTAAACATGACGTCCATGAGGTTTACGTTCACCTACCCATAAGTAGAAGTCTCAGACAGTCTGTTCCTACAAGAACTCTAGGTGTGTAA 1593 0.4476 MGSREDPNPISNESSATATATATATEPFLSSSTAVEEESESNQQYLHITYNSGPRSFKDLPFLILFLLFLLSTFAFGIFAIVHRNTASSCVNPSSTPLSLSLSLSLRSFPHWAKALTWTLLITFLLSLPLCWALLLSLNHYTKHIVYASLPFFILIPIFLNVYWFVACTLRSSCTHAFPLAYRILLMLFVFLLIGIIVWILVVNWHRLELTVSIIGVASNALSRNFTLFGVLPSMTIGLLLYYVPIILFMVFAKFNGKLVVKELEGQYDCVWKEDSWVPAYFALAILTMLWSAAAMVEAQVYVISGTIANWYFSKDYQAPKRSIRTSLRNAFGPSSGTICLSGLLICVVRMVRSAVDSARQEDTPGIVNLVLRCCVNALLTAVDFLNKFTINFAAITGEAYCSSARMTYELLRRNLLSAVFVETISSRLLAGIVFVLSAIYTIVVCAILKAGTNLGADSYFVAAMAWVLLIVVLGYFVHVLDNVIDTIYVCYAIDRDRGEVCKHDVHEVYVHLPISRSLRQSVPTRTLGV 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00339 530 Pfam Plasma-membrane choline transporter 189 497 IPR007603 GO:0022857|GO:0055085
Cca04g00339 530 MobiDBLite consensus disorder prediction 1 33 - -
Cca04g00339 530 PANTHER CTL-LIKE PROTEIN DDB_G0288717 45 511 - -
Cca04g00339 530 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 45 511 IPR007603 GO:0022857|GO:0055085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00339 - - gmx:100801313 778.089