Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00336 ATGGATCCCTTATCTTTCACTCTCATTGCTCTCCTACTCCTCACTCCCGCAGGTGTGAAAGCTGCCACCTTTACATTCGTAAACAAATGCGACTACACAGTGTGGCCAGGCATTCTCGCAAATGCCGGTAGCCCACCGCTCCAAACCACAGGCTTCGAGCTCGCAAAGGACACTTCACGCGCCTTCCAAGCCCCCACCGGCTGGTCCGGTCGCTTCTGGGGCCGAACCGGTTGCAGCTTCGACGGATCCGCCTCCGGTTCCTGCCTTACAGGCGACTGCGGCTCCGGCCAGGTGGAATGCAACGGCGCGGGAGCCGCTCCTCCGGCGACCCTGGCGGAGTTCACGCTGGGCACCGGCGGGCAGGACTTCTACGACGTGAGCCTGGTGGACGGGTACAATCTTCCGATGATCGTGGAGGGCAGCGGCGGGTCGGGTCTCTGCGCCTCGACGGGGTGCACGTCGGATCTGAACCAGCAGTGCCCGGCGGAGCTGAGAGCCTCGGAGGGAAGCGCGTGCAAGAGCGCGTGCGAGGCTTTTGGAAGCCCGGAGTACTGCTGCAGCGGCGCGTACGGGTCTCCGGGCACTTGCAGACCGTCCATTTACTCTGAAATGTTCAAGGCTGCTTGCCCTAGGTCCTATAGCTACGCATACGATGACGCTACCAGTACCTTTACGTGTACCGGTGCTGATTATACCATTACCTTCTGTCCATCATCTCCAAGTCAGAAATCTTCACGAGATATGAGCAGCCCAATGACCTCAACAACAACACCACAAGGTTCTGcagggacagtgacaggaacaggaacaggaacgggaTCCGAAGGAGCAGTGGTATACACGGGTTCTGATTCGGGAGTTGTGTATAATTCAGTTACGGATTCGGGATCAAGTTCAGGATCCGGAGGAGAAACAATGCTTGCAGATGGGTCTTATTTAGCTGGTTTAGCCATGGGAGACTCCCCTACAAGAATACTTTCTACGGCGTTTCTCTACTCTACTACCTTTTTGCTTATTCTAGTTCTCTCCTTGTTTTAG 1038 0.5443 MDPLSFTLIALLLLTPAGVKAATFTFVNKCDYTVWPGILANAGSPPLQTTGFELAKDTSRAFQAPTGWSGRFWGRTGCSFDGSASGSCLTGDCGSGQVECNGAGAAPPATLAEFTLGTGGQDFYDVSLVDGYNLPMIVEGSGGSGLCASTGCTSDLNQQCPAELRASEGSACKSACEAFGSPEYCCSGAYGSPGTCRPSIYSEMFKAACPRSYSYAYDDATSTFTCTGADYTITFCPSSPSQKSSRDMSSPMTSTTTPQGSAGTVTGTGTGTGSEGAVVYTGSDSGVVYNSVTDSGSSSGSGGETMLADGSYLAGLAMGDSPTRILSTAFLYSTTFLLILVLSLF 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00336 345 Pfam Thaumatin family 28 237 IPR001938 -
Cca04g00336 345 Gene3D Thaumatin 22 237 IPR037176 -
Cca04g00336 345 CDD TLP-PA 23 236 - -
Cca04g00336 345 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Cca04g00336 345 PRINTS Pathogenesis-related protein signature 71 82 IPR001938 -
Cca04g00336 345 PRINTS Pathogenesis-related protein signature 84 113 IPR001938 -
Cca04g00336 345 PRINTS Pathogenesis-related protein signature 122 138 IPR001938 -
Cca04g00336 345 PRINTS Pathogenesis-related protein signature 227 236 IPR001938 -
Cca04g00336 345 ProSiteProfiles Thaumatin family profile. 21 237 IPR001938 -
Cca04g00336 345 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 13 262 - -
Cca04g00336 345 SUPERFAMILY Osmotin, thaumatin-like protein 22 238 IPR037176 -
Cca04g00336 345 SMART tha2 24 237 IPR001938 -
Cca04g00336 345 PANTHER OS03G0233200 PROTEIN 13 262 IPR001938 -
Cca04g00336 345 MobiDBLite consensus disorder prediction 238 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00336 Cca-Chr4 3259748 3261950 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00336 4 262 Receptor kinase-like Gene Family AT5G38280 47.601 2.08e-79 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00336 - - gmx:100801173 585.489