Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00335 ATGTCAGCTGGACAAGATGGATTTCTAAGCAGACCCAAGGCAGAATGGACACCCACACGTGATGCATACTTGGTTGAACTTCTTATTGATCAACACAAGAGTGGAAGAACAGCTTACAATGAATTCAAAAATGAAGTCATAAAGTCTGTCACATGGGAGTTCAACAAAAGGTTTGGCCTCAACTTGGAAGAGAATCAGATCAAGAATCGCTACAATGTTATGAAGAAAGATTATGGTATTGTCAAGACACTGCTTAGTCACAAGGAATTTGTGTGGGATGAAACTCGCCATACGGTTGTGGCTGACGACAAAGTATGGGACAATTATATTATGGTAAGATGTGAGGCAAGACCTTTTAGACGCAAGAGTTTCCCACTCTATAAACAAATGTCCATCATATTTGAAGGCGAAAGAGGAATTCCAAAGGGCCAATTTCCCAGTGGAGCAATGGCCACAGCAGAAGAAGGAAACAGCAACACAGAAACAGTTCGGTCTTCAGAGCCATGTAACATACCAACACAAGTAATTGATGGTACCCTTGATTCTGATTCAATAATCCGCATCAACGAGGTGCTAACCAAGAAGCACAAATTTATCAATCCAGCAGAGTCAATTCGCAAGAAAAGAGCACACCTCAAAATTGGGGAAACCATAGAGAACACATTGTATGAGGTTTTCACAGCAGCCAAGTCCAAAGCCAAGCAAAGAAATGCATCCAATGCAACAACAATGTACAAGAATTGCTTGGAGGAGTTGCAGAAATTGGAGGAATTGGATGACAATGAGTTTGCAAAAGCTGTTAATGCACTTAAGGATGACAAAAATGCTATTGCTTTTATGACAATAAAAGGGCATAGGCGTTTAACCTGGTTAAGGGTGGTATCATCCTTCGTTTTCCACATGGCTCGCCTTCTTCTCTTTCTCATCATTCTCAGCCTCGTCGCGTTATCATTCCTCTCAGAGGTACAATCAGCATCGTTCAAGATCGTGAACAAGTGCCGCCACACCATATGGCCGGGATTACTCTCCGGCGCCAGCTCGCCGCCGCTTCCGACCACCGGATTCACCCTCAAGAGCGGAAAGTCAAAGACCATAACCATCCCCAAGTCTTGGTCGGGCCGGATATGGGCTCGGACCCTCTGCGCTCAAGGCTCCGACGGAAAGTTCTCCTGCGCCACCGCCGACTGCGGCTCCGGCAAAGTCGAGTGCGTCGGCGGCGCGAAGCCGCCGGCGACACTGGCGGAGTTCACCCTGAACGGCGCCGACGGGTTGGACTTCTACGACGTGAGTCTGGTGGACGGTTACAACCTTCCGATGCTGATCGTGGCGAAGGGAGGGACGAGGGGCGGGTGCAGCGCCACCGGGTGCCTGGTGGACCTGAACGGCGGGTGTCCGGCGGAGCTGAGGGTGGCGCGTGGAAACGGGAGCCGCGGGGGCGTGGCTTGCCGGAGCGCGTGCGAGGCTTTCGGGGACCCCCGCTTTTGCTGCAGCGAGGCGTACTCGACGCCTGACACGTGTGGTCCTTCTGTTtattctctgtttttcaagcacgcgtgcccacgcgcctacagctacgcgtacgatgacaagaccagcacctacacatgtgcatctgctaactatttaatcattttctgcccCTTGCCATATACCAGCCAAAAAGTGTTGGGAGCACGTAAAGATGGGGCACAACTTCCTCTGGTAAATAAAACTATGATGTACTTATCAAGGCTACAAGCAAGTGGTTCTTCAACATCAGGTAGATAA 1767 0.4658 MSAGQDGFLSRPKAEWTPTRDAYLVELLIDQHKSGRTAYNEFKNEVIKSVTWEFNKRFGLNLEENQIKNRYNVMKKDYGIVKTLLSHKEFVWDETRHTVVADDKVWDNYIMVRCEARPFRRKSFPLYKQMSIIFEGERGIPKGQFPSGAMATAEEGNSNTETVRSSEPCNIPTQVIDGTLDSDSIIRINEVLTKKHKFINPAESIRKKRAHLKIGETIENTLYEVFTAAKSKAKQRNASNATTMYKNCLEELQKLEELDDNEFAKAVNALKDDKNAIAFMTIKGHRRLTWLRVVSSFVFHMARLLLFLIILSLVALSFLSEVQSASFKIVNKCRHTIWPGLLSGASSPPLPTTGFTLKSGKSKTITIPKSWSGRIWARTLCAQGSDGKFSCATADCGSGKVECVGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNLPMLIVAKGGTRGGCSATGCLVDLNGGCPAELRVARGNGSRGGVACRSACEAFGDPRFCCSEAYSTPDTCGPSVYSLFFKHACPRAYSYAYDDKTSTYTCASANYLIIFCPLPYTSQKVLGARKDGAQLPLVNKTMMYLSRLQASGSSTSGR 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00335 588 Coils Coil 238 258 - -
Cca04g00335 588 SMART tha2 327 547 IPR001938 -
Cca04g00335 588 PRINTS Pathogenesis-related protein signature 425 441 IPR001938 -
Cca04g00335 588 PRINTS Pathogenesis-related protein signature 374 385 IPR001938 -
Cca04g00335 588 PRINTS Pathogenesis-related protein signature 387 416 IPR001938 -
Cca04g00335 588 PRINTS Pathogenesis-related protein signature 326 338 IPR001938 -
Cca04g00335 588 PRINTS Pathogenesis-related protein signature 537 546 IPR001938 -
Cca04g00335 588 MobiDBLite consensus disorder prediction 151 169 - -
Cca04g00335 588 ProSiteProfiles Thaumatin family profile. 324 547 IPR001938 -
Cca04g00335 588 SUPERFAMILY Osmotin, thaumatin-like protein 326 547 IPR037176 -
Cca04g00335 588 ProSitePatterns Thaumatin family signature. 387 403 IPR017949 -
Cca04g00335 588 PANTHER EXPRESSED PROTEIN 4 294 - -
Cca04g00335 588 Pfam Thaumatin family 331 547 IPR001938 -
Cca04g00335 588 Pfam Myb/SANT-like DNA-binding domain 15 109 IPR024752 -
Cca04g00335 588 MobiDBLite consensus disorder prediction 150 169 - -
Cca04g00335 588 Gene3D Thaumatin 325 547 IPR037176 -
Cca04g00335 588 CDD TLP-PA 326 546 - -
Cca04g00335 588 PANTHER L10-INTERACTING MYB DOMAIN-CONTAINING PROTEIN-LIKE ISOFORM X1 4 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00335 Cca-Chr4 3249989 3254650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00335 305 547 Receptor kinase-like Gene Family AT5G38280 51.626 1.76e-83 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00335 - - ccaj:109799200 587.03