Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00330 ATGTCAATGCCATCCCCAACCCTCAAACCCTCCAACCTCTGCATCGTCAAGCCCCTCCTCTCCAACTCCTCCCTCTCCGACGCCGTTTCATCTCTCGACCTGTTGCGCCTCAAGGGCATTCGCTTACCCTCTCACATTCTCGCCACCCTCCTGCGCCACTGCTCCAAAACCAGGTCTTACAAAGAGGGCAAGTTGATTCACCTCCACTTGAAGCTCACCGGCTTCAAACGCCCCCCAACGCTTCTCGCCAACCACTTGATCTCCATGTACTTCACCTGCGGCGATTTTGCTCAGGCACGCAAGGTGTTCGACAAAATGGAGGACAAAAATTTGTACACTTGGAACAATATGCTTTCTGGGTATGCTAAATTGGGCATGATGAAGCAAGCTAGGAGCTTCTTTTACCAAATGCCTCACAAGGATTATGTATCTTGGAATTCGATGGTTGTTGGGTATGCCCACAGTGGTAGGTTTGCTGAGGCTTTGAGATTATATCGGCAGTTCAGGAGACTGAATGTGGGGTATAATCAGTTTAGCTTTGCCAGTGTCTTGATTGTTTCTGTAAAGTTGAAGGATTTTGAACTTTGTAGGCAGATACACGGGCAGGTTTTACTTGTTGGGTTTTCATCTAATGTGGTTATATCCAGCTTAATTGTTGATGCTTATGCCAAGTGCGGGAAGACGGAAGATGCGAGGAGATTGTTTGATGACATGCCTGTGAAGGATGTTCGTGCGTGGACGACATTAGTTTCGGGTTATGCTGCGTGGGGGGACATGGAATTGGGTGCTGAATTGTTTAGTCAGATGCCCAAGAACAATTCCTGTTCCTGGACATATTTGATTAGGGGTTACGTTAGAAATGGTATGGGTCACAAAGCACTTGGAGTGTTTAGAGAGATGATCAAGCATCAAGTTAGACCCGATCAATTTACATTCAGTACTTGCCTCTCTGCTTGTGCCACTATTGCTTCACTGAAGCATGGTAAACAAATACATTCATTTTTGGTGCAAAATAACATCAAACCTAATACTATTGTCGTTTGTGCTATTATTGACATGTATTCGAAATGTGGAAGCTTGGAAACTGCCAGGCGAGTATTTGATTTCATTGGAAATAAGCAGTACGTAGTGTTGTGGAACACGATGATATCAGCACTGGCTCACTATGGCTATGGTATTGAAGCAATTATGATGCTAAATAATATGCTAAGATCAGGAGTGAAGCCAAACAGGGGCACTTTTGTTGCCATTTTAAATGCTTGTAGTCATTCAGGTCTTGTCCAGGAAGGGCTTCAGTTATTCAAGTCCATGATTACTGAGCATGGTGTCGTCCCTGACCAAGAACATTATGCATGCTTAACTGATCTTTTGGGTCGAGCTGGATGTTTTAACGAATCAGTGAAGGATCGGCAGATGATGGATTATAAGCCAGGTGACCATGTTTGGAATTCTTTGATGGGTGTATGTAGAATGCATGGAAAAGAAGTAGCTGTATTCCTTATTAAATTGCAGCCACAATCCTCTGCTGCCTACGAATTACTTTCAAGTATATATGCTGCACTTGGGAAACCGGAATTGGTTGAGAAAATAAGACATATCTTGGAGGAGAAACAAGTGAGGAAAACATCAGGCCATTAG 1638 0.4402 MSMPSPTLKPSNLCIVKPLLSNSSLSDAVSSLDLLRLKGIRLPSHILATLLRHCSKTRSYKEGKLIHLHLKLTGFKRPPTLLANHLISMYFTCGDFAQARKVFDKMEDKNLYTWNNMLSGYAKLGMMKQARSFFYQMPHKDYVSWNSMVVGYAHSGRFAEALRLYRQFRRLNVGYNQFSFASVLIVSVKLKDFELCRQIHGQVLLVGFSSNVVISSLIVDAYAKCGKTEDARRLFDDMPVKDVRAWTTLVSGYAAWGDMELGAELFSQMPKNNSCSWTYLIRGYVRNGMGHKALGVFREMIKHQVRPDQFTFSTCLSACATIASLKHGKQIHSFLVQNNIKPNTIVVCAIIDMYSKCGSLETARRVFDFIGNKQYVVLWNTMISALAHYGYGIEAIMMLNNMLRSGVKPNRGTFVAILNACSHSGLVQEGLQLFKSMITEHGVVPDQEHYACLTDLLGRAGCFNESVKDRQMMDYKPGDHVWNSLMGVCRMHGKEVAVFLIKLQPQSSAAYELLSSIYAALGKPELVEKIRHILEEKQVRKTSGH 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00330 545 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 38 270 - -
Cca04g00330 545 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 137 544 - -
Cca04g00330 545 SUPERFAMILY TPR-like 89 529 IPR011990 GO:0005515
Cca04g00330 545 Pfam PPR repeat family 376 422 IPR002885 -
Cca04g00330 545 Pfam PPR repeat family 273 320 IPR002885 -
Cca04g00330 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Cca04g00330 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Cca04g00330 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 445 IPR002885 -
Cca04g00330 545 Pfam PPR repeat 112 140 IPR002885 -
Cca04g00330 545 Pfam PPR repeat 348 368 IPR002885 -
Cca04g00330 545 Pfam PPR repeat 143 172 IPR002885 -
Cca04g00330 545 Pfam PPR repeat 84 110 IPR002885 -
Cca04g00330 545 Pfam PPR repeat 216 241 IPR002885 -
Cca04g00330 545 Gene3D Tetratricopeptide repeat domain 278 410 IPR011990 GO:0005515
Cca04g00330 545 Gene3D Tetratricopeptide repeat domain 17 170 IPR011990 GO:0005515
Cca04g00330 545 TIGRFAM PPR: pentatricopeptide repeat domain 245 273 IPR002885 -
Cca04g00330 545 TIGRFAM PPR: pentatricopeptide repeat domain 218 242 IPR002885 -
Cca04g00330 545 TIGRFAM PPR: pentatricopeptide repeat domain 112 141 IPR002885 -
Cca04g00330 545 TIGRFAM PPR: pentatricopeptide repeat domain 143 173 IPR002885 -
Cca04g00330 545 TIGRFAM PPR: pentatricopeptide repeat domain 413 446 IPR002885 -
Cca04g00330 545 TIGRFAM PPR: pentatricopeptide repeat domain 276 308 IPR002885 -
Cca04g00330 545 TIGRFAM PPR: pentatricopeptide repeat domain 377 410 IPR002885 -
Cca04g00330 545 Gene3D Tetratricopeptide repeat domain 186 274 IPR011990 GO:0005515
Cca04g00330 545 Gene3D Tetratricopeptide repeat domain 416 541 IPR011990 GO:0005515
Cca04g00330 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Cca04g00330 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00330 Cca-Chr4 3200869 3203083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00330 32 544 Glycoside Hydrolase AT3G49170 30.593 2.99e-75 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00330 - - gmx:100798659 899.427