Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00329 ATGGATTATGCGGCGGTTGGTTTCGATGGCAATGGCGAGGGAGAGAGCAAGAGAGTCAGTGAAGGGGTTTCTGAGGAGACTATAATGGGGTCTGATAAATTGAAGGGTTTAGAAGTAGAGGAGGTTTTTCAGGAGGCAATGGAGCCACGGGAGTATGTCTATGATCAAGGATCCGAACTCAATCCGGAGGATGTTGTAATTGATAAACACCAAGATACCGATACCGGTGTTGCATTGATTTCATCATTGGTGGATGAAAGTTCGGATGCGGCGAAGGAACCTGGCTTCTCTGAGGAGCCTTTTGCGGCGGATACCGAGTCTGGGATACTGGGGGAAACTGATGAGCTGGGAATTAATAGTGTTCAGCTGGATGGTGTTGATACTGGCGTGTCTGGAGATGGGGAATTTGGGGATGTGTCCCATGGTACGGGGGAGGATAATCTGGAGAGTAGTGAATGGAGTGGTGGAAAGGAAGAGTCTGGTTTAAATTCTGATAGAGAGATGTTAGTCAAGGAGAATGGTGCTAATGTGGATGGAAACTCTGGTTTGGTGAGTGAGAAGGCTGAAATTGATGATTCGGAATTCATGACTCCTAGAGCAAATGGTGATATAATATTAGACACTGGAAGCATAGACAAGGTGGATGGGGTTGCTACTGAGGCTACTATGGAATCTGAATCCAGTGAGGTGATCCCAACCCAAGGTACTGATGCTGCTGAGGATTTGAAGGAGTTTGGCTCAGATCCTGAGTTTGGAGATGACAAAATAGAGGTAAATGCTTCAGCTAATCCTTCTGGTGAGATTCAAGATGATACATGTGAAGTAGTAAACGACAATTCAACTCACATGATTTTAGAACCTCAAGATGAAGTAATCAGGGATATTGTGAAGGATGATTCTCTGGGCACTGACATAAACCACGAGGATAGAAATGGGGAAGAAATTAGTGTCTGTGGTCAGAATACTGAATTAAGAGATTATGGAAATGGGGATTCCTTTTTGGAAAATTCCTCTATTAATGAGACTCAGCCTATTCAGGAGGCTAGTGCAGCTAATCCAAAGGAAGCAAGTAATAAGGATGACCAATCTAAGATTTCTGATGAAGAGCATATAGATCATGGCAACTCTTCTGTGGTTGAGGAGCCTGAAAGGATACAGGAGAATATTATACAACAGATGGAAACCACTCAAGTGACTGGAGAGCATGATCAGCCTGCAGCAAATATTTATTCTCCATCTGAAAGGTCTGCTGGTACTGGGCCTCCTCCTGTTCGCTCTTCAAATGAAAGATCTGCTGGTGCTGGGCCCCCTCCTGTACGTCCAGCTGGCCTTGGTCGTGCAGCCCCATTGCCGGAACCAGCATCTCGGGTAGCCCAGCAGCCTCGCACTAATGGTACTGTATCTAATAATCAGTCTCAGCAAATGGAGGACTCCTCAACTGGGGAGGCTGAGGAGTATGATGAGACGCGTGAGAAACTTCAGATGATCAGGGTGAAGTTTTTACGGTTGGCTCATAGGCTTGGCCAAACTCCCCATAATGTTGTTGTAGCTCAAGTTTTATATAGATTAGGGCTGGCTGAGCAACTCAGAGGAAGGAATGGAGGGCGTGTTGGTGCTTTTAGCTTTGATCGTGCAAGTGCAATGGCTGAGCAGCTTGAAGCTGCTGGTCAGGAGCCACTTGATTTTTCTTGTACAATAATGGTCCTTGGAAAGACTGGAGTAGGTAAAAGTGCTACCATCAATTCTATTTTTGATGAGGTTAAGTTCAATACCAGTGCTTTCCACATGGGAACCAAGAAGGTTCAGGATGTTGTGGGAACAGTGCAGGGCATTAAGGTACGGGTCATTGATACGCCGGGACTTCTGCCTTCCTGGTCAGACCAGCGAAGTAATGAGAAGATCCTGCTTTCTGTTAAGAACTTCATTAAGAAAACGCCACCTGATATTGTGTTGTACCTTGATAGGTTAGATATGCAGAGCAGGGATTTTAGTGATATGCCACTCTTACGCACAATTACAGAAATTTTTGGGCCATCCATTTGGTTTAATGCCATTGTGGTTCTGACTCATGCCGCATCTGCTCCTCCTGAAGGCCCTAATGGTACTGTTTCCAGTTATGACATGTTTGTTACTCAGCGGTCACATGTTGTACAGCAAGCCATTCGTCAAGCAGCTGGTGACATGCGTCTCATGAATCCTGTATCATTGGTGGAGAATCACTCTGCATGCCGAACAAATAGGGCTGGTCAGAGAGTGTTGCCTAATGGTCAGGTTTGGAAACCTCATTTGTTACTTCTATCTTTTGCCTCCAAAATTCTGGCTGAAGCAAATGCTCTTCTCAAGTTACAAGATAGTCCACCTGGGAAGCCTTTTACAGCTCGAGCAAGAGCACCTCCATTACCTTTTCTTTTGTCAACCCTTCTCCAATCAAGACCGCAATTAAAGTTGCCAGAGGAGCAGTTTGGTGATGAGGACAGTCTTGATGACGACCTTGATGAATCATCAGAGTCTGATGATGAAACTGAACATGATGACTTACCACCATTTAAACCTTTAACTAAGGCCCAGTTGGAAAAGCTGTCTAAAGCTCATAAGAAAGCATATTTTGATGAGTTAGAGTATAGAGAAAAGCTTTTAATGAAGAAACAATTGAAGGAAGAAAAAAAGCGACGGAAAATGATGAAGAAAATGGCAGAATCAGCAAAACATCAGCCGATGGACTATAGCGAAAATGTGGAAGAAGAAAGTGGGGGTGCAGCTTCTGTTCCTGTTCCCATGCCAGATTTGGCCCTGCCTGCTTCTTTTGATTCAGACAATCCCACTCATCGGTATCGATATCTTGATTCATCAAACCAGTGGCTTGTAAGACCTGTTCTAGAAACTCATGGATGGGATCATGATGTGGGTTATGAAGGGTTGAATGTAGAAAGATTGTTCGTTGTCAAGGACAAGATACCTTTATCTTTCACGGGTCAGGTTACTAAGGATAAAAAAGATGCGAATGTTCAGATGGAAATAGCCGGTTCACTTAAGCATGGGGAAGGGAAAGCAACTTCATTAGGTTTTGATTTGCAAACTGTGGGGAAGGACTTAGCTTATACGTTACGCAGTGAGACAAGATTTACTAATTTTAGAAGAAATAATGCAACTGCTGGCCTCTCGTGTACTTTACTTGGTGATGCTTTATCAGCTGGAATGAAGATTGAAGACAAATTGGTTGCTAGTAAGCGATTCAAATTAGTTATAAGTGGTGGTGCAATGGCAGGGCGTGGCGACATTGCTTATGGTGGCAGTTTGGAGGCCCAATTGAGAGATAAGGATTACCCTCTAGGTCGTTTCTTATCCACGCTTGGGCTTTCTGTTATGGATTGGCATGGAGATCTTGCTGTTGGGTGCAATGTGCAATCCCAGATCCCAGTTGGAAGACATACAAACCTTGTTGTGCGGGCTAATTTGAACAACCGAGGGGCAGGACAAATAAGTATCCGTTTGAATAGTTCAGAACAGCTTCAAATTGCTTTGATTGCTCTCGTCCCTCTCGTAAGGAAACTTGTTGGTTATCCTCAACAATTGCAGTTTGGGCAatga 3588 0.4423 MDYAAVGFDGNGEGESKRVSEGVSEETIMGSDKLKGLEVEEVFQEAMEPREYVYDQGSELNPEDVVIDKHQDTDTGVALISSLVDESSDAAKEPGFSEEPFAADTESGILGETDELGINSVQLDGVDTGVSGDGEFGDVSHGTGEDNLESSEWSGGKEESGLNSDREMLVKENGANVDGNSGLVSEKAEIDDSEFMTPRANGDIILDTGSIDKVDGVATEATMESESSEVIPTQGTDAAEDLKEFGSDPEFGDDKIEVNASANPSGEIQDDTCEVVNDNSTHMILEPQDEVIRDIVKDDSLGTDINHEDRNGEEISVCGQNTELRDYGNGDSFLENSSINETQPIQEASAANPKEASNKDDQSKISDEEHIDHGNSSVVEEPERIQENIIQQMETTQVTGEHDQPAANIYSPSERSAGTGPPPVRSSNERSAGAGPPPVRPAGLGRAAPLPEPASRVAQQPRTNGTVSNNQSQQMEDSSTGEAEEYDETREKLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLEAAGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFNTSAFHMGTKKVQDVVGTVQGIKVRVIDTPGLLPSWSDQRSNEKILLSVKNFIKKTPPDIVLYLDRLDMQSRDFSDMPLLRTITEIFGPSIWFNAIVVLTHAASAPPEGPNGTVSSYDMFVTQRSHVVQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANALLKLQDSPPGKPFTARARAPPLPFLLSTLLQSRPQLKLPEEQFGDEDSLDDDLDESSESDDETEHDDLPPFKPLTKAQLEKLSKAHKKAYFDELEYREKLLMKKQLKEEKKRRKMMKKMAESAKHQPMDYSENVEEESGGAASVPVPMPDLALPASFDSDNPTHRYRYLDSSNQWLVRPVLETHGWDHDVGYEGLNVERLFVVKDKIPLSFTGQVTKDKKDANVQMEIAGSLKHGEGKATSLGFDLQTVGKDLAYTLRSETRFTNFRRNNATAGLSCTLLGDALSAGMKIEDKLVASKRFKLVISGGAMAGRGDIAYGGSLEAQLRDKDYPLGRFLSTLGLSVMDWHGDLAVGCNVQSQIPVGRHTNLVVRANLNNRGAGQISIRLNSSEQLQIALIALVPLVRKLVGYPQQLQFGQ 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00329 1195 MobiDBLite consensus disorder prediction 1 25 - -
Cca04g00329 1195 MobiDBLite consensus disorder prediction 125 164 - -
Cca04g00329 1195 TIGRFAM 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains 440 1186 IPR005690 GO:0003924|GO:0005525|GO:0009707|GO:0045036
Cca04g00329 1195 Pfam AIG1 family 564 698 IPR006703 GO:0005525
Cca04g00329 1195 Gene3D - 533 781 IPR027417 -
Cca04g00329 1195 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 358 1190 IPR045058 -
Cca04g00329 1195 MobiDBLite consensus disorder prediction 144 158 - -
Cca04g00329 1195 MobiDBLite consensus disorder prediction 315 356 - -
Cca04g00329 1195 MobiDBLite consensus disorder prediction 396 426 - -
Cca04g00329 1195 MobiDBLite consensus disorder prediction 822 842 - -
Cca04g00329 1195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 557 698 IPR027417 -
Cca04g00329 1195 MobiDBLite consensus disorder prediction 357 380 - -
Cca04g00329 1195 CDD Toc34_like 536 781 - -
Cca04g00329 1195 Coils Coil 884 904 - -
Cca04g00329 1195 MobiDBLite consensus disorder prediction 815 851 - -
Cca04g00329 1195 MobiDBLite consensus disorder prediction 302 384 - -
Cca04g00329 1195 MobiDBLite consensus disorder prediction 396 488 - -
Cca04g00329 1195 ProSiteProfiles AIG1-type G domain profile. 561 790 IPR006703 GO:0005525
Cca04g00329 1195 Pfam Translocase of chloroplast 159/132, membrane anchor domain 922 1185 IPR024283 -
Cca04g00329 1195 MobiDBLite consensus disorder prediction 457 479 - -
Cca04g00329 1195 PANTHER TRANSLOCASE OF CHLOROPLAST 120, CHLOROPLASTIC-LIKE 358 1190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00329 Cca-Chr4 3190420 3194948 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00329 - - gmx:100810931 1852.8