Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00319 ATGCCGAAGCCTTGTGACTTGCAAATCAACATTGATGGTCAGCAGATATTCTTTTTGAAAGAGAAGGTTATATCAAAATACTGTGGGGGGTTGAAGAAAGTCTTGAATCACCAAAAGAGAAGATGTCAAGTGAAGCAGTTGGGGATTAGGATCAATGATTTCCCTGGAGGACCAGAAGGGTTTGAGCTAGTTTCAAGGTTTTGTTACAACAATGGCAAAATCCAAATCACTGTAGCTAATGTGTCTCTCCTCCACTGTTGTGCTGTTTATCTTGGAATGACTGAGGAGGTATTCAGCAACAATCTCTTGCAACAAACAGAAACTTTTCTTGAGGGAATCTATTACTGGAAATGGAGTGACATACAAGCAAGTCTCAAGAGTTGCCAGTTGTTTTATGCATATGTAGATGGCTATGGTCTATTGGAGAAGATCATTTGTGCCTTGGCAAAGATTGTCCAGAATTCAGATGCAAACTtcgtcacttcctcaccttcatgttcatcatcatcaacttcaccaGAAAGCAATTCTGCTAAGAGATTCTCTTTTGCATCCAAAGCCACCCCAGAAAAAATAAAGTCAACTTTGTCACGCAAGGCATGGTGGTTTGATGATTTGGAAACTTTACCACCAAAGATCATTGAGAAACTCTTCCAGACTATTGGAGCATACAAAGCTGATAACAAAGATTTAGTCCTCACAAGGTTTCTGTTACATTATCTGAAAATAGCTACTCAAACCGGAGTGGTTAATTGCAGTAACAGCAATGAGTATGCTGCTCTTGCAGAAACAGCTGCTTATGGAGTCATATTTGTTGGAAGAATGAACTTTTCTTGCAGAGGCCTTTTTTGGGTACTAAGGATTGTATCAAAGTTTGGGTTGAGTAGAGGCTGCAGAACTGAATTGGAGAAATTGATTGGTGGGATGCTTGAGCAAGCTACACTAGATGATCTTCTAGTCTCTGGTCATGACATAGGAGTTTATTATGATGTTAATTTGGTGATAAGATTGGTTAGACTATTTGTTGATATTAATGGTTCTGATGGAGTGTCTTTAGAGAAACTGAAAAAGGTTGGTAGGTTAGTTGACAAGTATTTGAGAGAGATATCCCCTGACCAGAACCTCAAGATCTCTAAATTTCTTGGAGTAGCAGAATGCTTACCAGACTCTGCAAGGGATTGTTATGATGGAGTCTACAAGGCCATTGACATCTATATTGAGTCTCACCCAATTATCACATTTGAAGAAAGATCGAGACTGTGTAGATGTCTTAATTACAGCAAACTCAGCTTTGAAGCTAGTAAGGATCTGGCCAAGAACCCCAGAATACCTCCAAGGGTTGCAATGCAGGCTCTCATTTCTCAACAATCAAAAATCCCAACGAGTGACTTTGTAACCGAGAGTCCAAGAATGAAGCCTTCCCAAATAGTTTTGTACAATGAAACCAACAAAGATAGCTTCTCCCAAGAGAAGAAAGATATGAGACTAAACCTGGAGAGAATGCAATGGGGAGTGATAGAATTGGAGAAATTACACAAAATGAACGGTCAAGTGTCAAAGTTGTTGACTCATCATGTCTCGCTTAATCCTGCACGTGCTTCATCATCACCAAGATTTTGTTGA 1623 0.3851 MPKPCDLQINIDGQQIFFLKEKVISKYCGGLKKVLNHQKRRCQVKQLGIRINDFPGGPEGFELVSRFCYNNGKIQITVANVSLLHCCAVYLGMTEEVFSNNLLQQTETFLEGIYYWKWSDIQASLKSCQLFYAYVDGYGLLEKIICALAKIVQNSDANFVTSSPSCSSSSTSPESNSAKRFSFASKATPEKIKSTLSRKAWWFDDLETLPPKIIEKLFQTIGAYKADNKDLVLTRFLLHYLKIATQTGVVNCSNSNEYAALAETAAYGVIFVGRMNFSCRGLFWVLRIVSKFGLSRGCRTELEKLIGGMLEQATLDDLLVSGHDIGVYYDVNLVIRLVRLFVDINGSDGVSLEKLKKVGRLVDKYLREISPDQNLKISKFLGVAECLPDSARDCYDGVYKAIDIYIESHPIITFEERSRLCRCLNYSKLSFEASKDLAKNPRIPPRVAMQALISQQSKIPTSDFVTESPRMKPSQIVLYNETNKDSFSQEKKDMRLNLERMQWGVIELEKLHKMNGQVSKLLTHHVSLNPARASSSPRFC 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00319 540 PANTHER OS12G0117600 PROTEIN 2 515 IPR043454 -
Cca04g00319 540 Pfam NPH3 family 201 434 IPR027356 -
Cca04g00319 540 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 2 515 - -
Cca04g00319 540 ProSiteProfiles NPH3 domain profile. 200 458 IPR027356 -
Cca04g00319 540 SUPERFAMILY POZ domain 3 95 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00319 Cca-Chr4 3092158 3095303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00319 6 462 EF-hand Containing Proteins AT3G44820 28.313 9.19e-53 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00319 - - gmx:100808259 934.095