Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca04g00313 | ATGGCATCGAGAACGAGAACCCTAACGGACATTTTCCAACCCGTTTCGAAGCGCTCGAAGCCCACTCTCGCCGCGTCCTGCAACTCCGACGGCGCCAATGCCACCGCTCTCTCCGTCGACCAAAAGTCGCGCGTCGAATACCAAAAGTTCCTCGCCAAGTCAAAGAGGAATCTCAAACTCTGCGTCGAGAGGCTCCAGAAAAGCAAAGGTTCAGGTTCAGGTGGCGTGAAGCTCGAGGAGCTTCTGGTGGAGGAAACGTGGCTCGAGGCTCTCCCTGCCGAACTTCAAAAACCCTATGCCCTCACTCTCTCCAAGTTCGTCGAAAGCGAGATTTCCACCGGCGACGACGTCGTTTACCCTCCCACGCACTTGATTTTCAATGCTCTTAACTCTACCCCTTTTCATAGAGTCAAAGCTGTTATCCTTGGCCAGGACCCTTATCATGGGCCTGGTCAAGCAATGGGGCTTTCATTCTCAGTCCCTGAAGGGGTCAAAATACCTTCCAGTTTGGTAAATATTTTCAAGGAGCTTCACCAAGACCTCGGCTGCTCCATTCCACTTCATGGAAATCTTCAAAAGTGGGCAGTGCAGGGTGTTCTCTTACTCAATGCTGTTCTCACAGTCAGGAAGCATCAAGCAAATTCTCATGCCAAAAAAGGCTGGGAACAATTTACTGATGCTGTTATCAAGACAATCTCACAGAAGAAGGAAGGAGTTGTGTTTCTGTTGTGGGGAAACTCTGCTCGGGAGAAATCCAGGTTAATTGATGCAACAAAGCATCATGTTCTTAAAGCTGCACATCCTTCTGGTTTGTCTGCAAATAGAGGCTTCTTTGGCTGCAGGCACTTCTCTCGCACTAACCAACTTCTGGAGCAAATGGGGGTTGATCCCATAGATTGGCAACTATAA | 909 | 0.4939 | MASRTRTLTDIFQPVSKRSKPTLAASCNSDGANATALSVDQKSRVEYQKFLAKSKRNLKLCVERLQKSKGSGSGGVKLEELLVEETWLEALPAELQKPYALTLSKFVESEISTGDDVVYPPTHLIFNALNSTPFHRVKAVILGQDPYHGPGQAMGLSFSVPEGVKIPSSLVNIFKELHQDLGCSIPLHGNLQKWAVQGVLLLNAVLTVRKHQANSHAKKGWEQFTDAVIKTISQKKEGVVFLLWGNSAREKSRLIDATKHHVLKAAHPSGLSANRGFFGCRHFSRTNQLLEQMGVDPIDWQL | 302 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca04g00313 | 302 | Hamap | Uracil-DNA glycosylase [ung]. | 84 | 301 | IPR002043 | GO:0004844|GO:0006281|GO:0006284 | |
| Cca04g00313 | 302 | SMART | UDG_2 | 130 | 290 | IPR005122 | - | |
| Cca04g00313 | 302 | SMART | UDG_2_a | 130 | 290 | - | - | |
| Cca04g00313 | 302 | ProSitePatterns | Uracil-DNA glycosylase signature. | 138 | 147 | IPR018085 | GO:0006281|GO:0016799 | |
| Cca04g00313 | 302 | CDD | UDG-F1-like | 99 | 300 | IPR002043 | GO:0004844|GO:0006281|GO:0006284 | |
| Cca04g00313 | 302 | SUPERFAMILY | Uracil-DNA glycosylase-like | 82 | 302 | IPR036895 | - | |
| Cca04g00313 | 302 | Pfam | Uracil DNA glycosylase superfamily | 135 | 289 | IPR005122 | - | |
| Cca04g00313 | 302 | Gene3D | - | 66 | 302 | IPR036895 | - | |
| Cca04g00313 | 302 | PANTHER | URACIL-DNA GLYCOSYLASE | 2 | 302 | IPR002043 | GO:0004844|GO:0006281|GO:0006284 | |
| Cca04g00313 | 302 | TIGRFAM | ung: uracil-DNA glycosylase | 85 | 293 | IPR002043 | GO:0004844|GO:0006281|GO:0006284 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca04g00313 | K03648 | - | gmx:100818241 | 521.546 |