Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00310 ATGCAACATAGATGGCACTTTCCACTTGCATTCCCAAGCTTTCAAGGTTACATCCACACTAACAGACGCAAATGCCATTTCTTCTCCATGATTCTCCAACACGCTTCTCTCTGTCCCTGCAACACTAACACCACCGCATTCCCCTTCTCCCGCAGAACCAGGAAGCGCTTATTCTCCCGCAAATTCCGCAGAAAATGGACCCTCCTCTTCTGCGCAGCAATCCCCTCCGACGCTACTCCCAAACACAGCCTCACCAACCGCCCAACCCACGCCCTCAGACGAATCTCAAACCAACTCCAGACCGCCGATTACGACGCCCAATTGCAGCCACAACCGCCCTCGCCGCCGGTTCAATTAGGTTCCACCTTCACCGGCTTCCGCGAGGATCCCATCGTCGATAAGCTGAGGACGCAGCTAGGCGTCATTCACCCGATTCCCTCTCCTCCGATTAACCGCAAcgtcgtcggactgttcgtcttctttttcttcgtcggcgtcgtcttcgACAAGCTCTGGACTTGGCGCCGCGGCAGGGGCAAGAGTGGCGGCGAGGACAGGCTGCGCGGCGCCTGGCCTCAGGTGCCCACGAGCTTCTCGCTGTTTCTGGAGAAGGATTTGCAGCGGAAGGAGTCGGTGGAGTGGGTCAACATGGTGTTGGGGAAGCTCTGGAAGGTGTATAGAGGCGGAATTGAGAATTGGATCATAGGGCTGCTTCAGCCTGTGATTGATAACCTCAAGAAGCCTGATTACGTCCAGCGGGTGGAGATTAAGCAGTTCTCCTTAGGGGATGAACCCTTGTCTGTTAGGAATGTTGAGCGCAGGACCTCTCGCCGGGTCAATGATTTGCAGTACCAGATAGGCCTTAGGTATACAGGTGGTGCTCGCATGCTGTTAATGCTTTCTCTGAAATTTGGCATAATTCCAATTGTCGTACCTGTTGGTGTTCGAGATTTTGACATTGATGGTGAACTTTGGGTAAAATTAAGACTAATACCAACAGAACCTTGGGTAGGAGCTGTTTCATGGGCTTTTGTTTCACTTCCAAAGATCAAATTTGAATTATCTCCATTCCGTCTGTTCAATTTAATGGCAATTCCAGTTCTCTCGATGTTTTTGACTAAACTTCTCACTGAAGATTTACCTAGACTATTTGTACGGCCAAAGAAAATTGTTTTGGATTTCCAAAAGGGAAAAGCTGTTGGCCCAGTTGCTGGTGATGTTAAATCTGGAGAAATGCAAGAAGGAAACCAGGATTCTGTGGGTGAACTATCTGTTACTCTTGTGGATGCTCGAAAGCTTTCTTATATTTTCTATGGCAAGACAGATCCTTATGTTATTCTTAGCCTCGGAAATCAAGTTATACGAAGCAAAAAGAACAGTCAAACCACTGTAATTGGACCCCCTGGAATGCCAATTTGGAATCAGGATTTTCATATGCTTGTTTCCAACCCTAAAAAACAGAAGTTATCTATCCAAGTTAAGGACGCTCTAGGATTTGCAGATTTGACTATTGGTACCGGAGAGGTTGATTTGGGATCTCTTAAAGACACTGTACCAACAGACAGAATTGTGGTTTTACAAGGAGGTTGGGGATTTTTAGGGAAGCGCTCTTCTGGGGAAATATTACTTCGGCTAACATATAAAGCATATGTGGAGGATGAGGAAGATGATAAAACTGTGCTGGATTCCATTGACACCGATGCTTCTGATGATGAATTGTCTGATTTAGAGGCAAATGTCACTAATGAGAAGGATGAAAGATATTCTATGTATGAAACAGAGTCATTTATGGATGTTTTGGCAGCATTAATTGTTAGCGAAGAATTTCAGGGGATAGTAGCATCTGAAACAGGGTTTAGCAAAGCTTTGGATAATGGCTCAAATGCTGGGCCTAAAGTGTCAAAATCTTCAGTCCCCAATGCTGAACCAATTCCTGCTAGTTCTGATAATTCTGAAGGCTCTGGAGGGTCAGCTTTATTTTGGCTTGCTGTGATTACTAGCATATCTCTACTAATTGCTCTCAATATCGGGGGTTCCAGTCTATTCAATCCTTAA 2055 0.4487 MQHRWHFPLAFPSFQGYIHTNRRKCHFFSMILQHASLCPCNTNTTAFPFSRRTRKRLFSRKFRRKWTLLFCAAIPSDATPKHSLTNRPTHALRRISNQLQTADYDAQLQPQPPSPPVQLGSTFTGFREDPIVDKLRTQLGVIHPIPSPPINRNVVGLFVFFFFVGVVFDKLWTWRRGRGKSGGEDRLRGAWPQVPTSFSLFLEKDLQRKESVEWVNMVLGKLWKVYRGGIENWIIGLLQPVIDNLKKPDYVQRVEIKQFSLGDEPLSVRNVERRTSRRVNDLQYQIGLRYTGGARMLLMLSLKFGIIPIVVPVGVRDFDIDGELWVKLRLIPTEPWVGAVSWAFVSLPKIKFELSPFRLFNLMAIPVLSMFLTKLLTEDLPRLFVRPKKIVLDFQKGKAVGPVAGDVKSGEMQEGNQDSVGELSVTLVDARKLSYIFYGKTDPYVILSLGNQVIRSKKNSQTTVIGPPGMPIWNQDFHMLVSNPKKQKLSIQVKDALGFADLTIGTGEVDLGSLKDTVPTDRIVVLQGGWGFLGKRSSGEILLRLTYKAYVEDEEDDKTVLDSIDTDASDDELSDLEANVTNEKDERYSMYETESFMDVLAALIVSEEFQGIVASETGFSKALDNGSNAGPKVSKSSVPNAEPIPASSDNSEGSGGSALFWLAVITSISLLIALNIGGSSLFNP 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00310 684 MobiDBLite consensus disorder prediction 624 653 - -
Cca04g00310 684 Gene3D C2 domain 404 550 IPR035892 -
Cca04g00310 684 ProSiteProfiles C2 domain profile. 408 524 IPR000008 -
Cca04g00310 684 SMART C2_3c 422 523 IPR000008 -
Cca04g00310 684 CDD C2 423 517 - -
Cca04g00310 684 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 421 550 IPR035892 -
Cca04g00310 684 Pfam C2 domain 421 517 IPR000008 -
Cca04g00310 684 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 208 395 IPR031468 GO:0008289
Cca04g00310 684 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 45 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00310 Cca-Chr4 2973187 2981513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00310 438 558 Acyl Lipid Metabolism Gene Families AT4G13550 31.967 7.25e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00310 - - gmx:100817508 1050.43