Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca04g00308 | ATGGCTTCGCCCGCGTGGTTGCCGCAGGACCCACAGCCACAGCCACCTGTGTCCGGAGAAACGCCTCTTCCCGTGCCTTCTTCCGCTCCTGCAACTCCTTCTTCCGCTccgccaccgccaccaccaccgccaTTCGCGTACGGCGTGCTTCACAGTGTTAACGCTTCCGTCAGTTCTCAGCACTCATCGACACATCCTGCGATGAAATCCAATTCTTCAGCAAATCCCATGGCTGTTCAACCTCAAGTACCTGGTGTCTCTTCACATGCTGCTCCTTCATTTTCGTATAATATTCCCCAGAGTGGTGCCTCTTTTTCTAGCAACCTGCATCATGCACAATCTAACACTAATATGTCGGATTCTGCTGCACAGGATGTTAGTAAATTGTCATCTGCATCAAGTATCCCTCATTCTGTCCCTGCTCATACTTCTACATCCATAATGCCGCCACCCTCTGACCCTAATTATCGCCCAGCTACTTCATGGATGCCAACTGCCCTGCCTTTTCCTGTGCATCCTTTGATGCCTACTCCAGGGAATCCTGGCCCTCCTGGATTAGCATCATCCGCGATAATTTCCTCCAATCCTGCTGCTCCATCCACAGGCACAGATTCTTCCCCAGCTGCATTACTGAGACCAAACATGCCAACTTCAGCCATTGCATCAGATCCTACTGCCCCTCAGAAAGGTTTACCCTATCCATCCATGCCTGCCATGGCTGCTCCCCCTCAGGGAGTTTGGTTACAGCCCCCGCAGATGAGTGGTGTACTTAGACCACCATATCTTCAATACCCTGCTCCTTTTCCTGCTCCCTTTCCATTTCCAGCGCGTGGTGTTGCTCTCCCTGCTGTTCCAATACCTGATTCTCAACCTCCTGGTGTTACACCTGTGGGTGCTGTTGGTGGCACTTCTACACTTGTTTCTGGCCATCAGCTGAGGGGAACAATTGCTTTGCAAACAGAAGTTATTTCAGGGCCTGCTGATGATAAGAAGAAATTAAATGCTGTTGAAACCCAAAATCAGGATGCTGCTAGTAATGATCAATTAGATGCCTGGACAGCCCACAAGACTGAAGCAGGAATTATATACTATTATAATGCTGTGACAGGAGAATCAACGTATGATAAACCTGCTGGTTTTAAAGGGGAGCCTCACCAAGTTTCTGCTCAGCCCACTCCAGTTTCAATGACGGATTTGCCTGGAACTGATTGGATGTTGGTCTCTACTAGTGATGGAAAAAAGTATTACTACAACAATCGAACCAAGACTAGCTGCTGGCAAATCCCAAATGAGGTGACTGAATTGAAAAAGAAGCAGGATGGTGATGTTACAAAAGATCATTTAATGTCAGTTCCAAATACTAATGTATTGTCTGATAGAGGGTCTGGATTGGTTACTCTGAATGCTCCTGCTATTAATACTGGTGGTCGTGATGCTGCAGCTCTTAAATCCTCTAGTCAGCAGACCTCATCATCGGCACTGGATTTGATCAAGAAGAAATTGCAGGACTCAGGAACACCTGTTGCTTCCTCTGCTATTCCTGCACCATCAGTACAAACAGGATCTGAATCAAATGGTTCAAAAATAGTTGAATCTACAACTAAGGGCCTGCAAGTAGATACTAACAAAGATAAACAAAAAGATACTAATGGTGATGCTAACATCTCTGACACATCCTCAGATTCTGAAGAAGAAGATAGTGGACCTTCAAAGGAGGAGTGCATCATTCAATTTAAGGAGATGCTCAAGGAGCGAGGGGTGGCACCATTCTCAAAGTGGGAGAAAGAACTGCCAAAGATAGTATTTGATCCACGTTTTAAGGCCATCCCGAGTTATTCTGCTAGGAGATCCTTGTTTGAGCATTATGTTAAAACTCGTGCTGAAGAAGAACGTAAAGAAAAACGTGCTGCACAGAGGGCTGCAATTGAAGGATTTAAGCAGTTATTGGATGAAGCCTTGGAGGATATTAATCACAATACTGATTATCAAACTTTTCGGAAGAAATGGGGAAACGATCCACGGTTTGAGGCATTGGATCGCAAAGAACAAGAGCACCTATTGAATGAAAGAGTGCTTCCTTTGAAGAAAGCTGCTGAAGAAAAGGCTCAAGCAATGCGTGCAGCTGCTGCAGCAGGTTTTAAATCAATGCTTAAGGAGCGAGGAGATATAATTTTTAACTCCCGTTGGTCCAGGGTTAAAGAAAGTTTAAGGGATGACCCAAGATATAAATCTAAAGAGAGACCAAAGCTAAAAGGGAGGAGCAGGACAAGCTGA | 2274 | 0.4499 | MASPAWLPQDPQPQPPVSGETPLPVPSSAPATPSSAPPPPPPPPFAYGVLHSVNASVSSQHSSTHPAMKSNSSANPMAVQPQVPGVSSHAAPSFSYNIPQSGASFSSNLHHAQSNTNMSDSAAQDVSKLSSASSIPHSVPAHTSTSIMPPPSDPNYRPATSWMPTALPFPVHPLMPTPGNPGPPGLASSAIISSNPAAPSTGTDSSPAALLRPNMPTSAIASDPTAPQKGLPYPSMPAMAAPPQGVWLQPPQMSGVLRPPYLQYPAPFPAPFPFPARGVALPAVPIPDSQPPGVTPVGAVGGTSTLVSGHQLRGTIALQTEVISGPADDKKKLNAVETQNQDAASNDQLDAWTAHKTEAGIIYYYNAVTGESTYDKPAGFKGEPHQVSAQPTPVSMTDLPGTDWMLVSTSDGKKYYYNNRTKTSCWQIPNEVTELKKKQDGDVTKDHLMSVPNTNVLSDRGSGLVTLNAPAINTGGRDAAALKSSSQQTSSSALDLIKKKLQDSGTPVASSAIPAPSVQTGSESNGSKIVESTTKGLQVDTNKDKQKDTNGDANISDTSSDSEEEDSGPSKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQRAAIEGFKQLLDEALEDINHNTDYQTFRKKWGNDPRFEALDRKEQEHLLNERVLPLKKAAEEKAQAMRAAAAAGFKSMLKERGDIIFNSRWSRVKESLRDDPRYKSKERPKLKGRSRTS | 757 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca04g00308 | 757 | SMART | ww_5 | 347 | 379 | IPR001202 | GO:0005515 | |
| Cca04g00308 | 757 | SMART | ww_5 | 399 | 431 | IPR001202 | GO:0005515 | |
| Cca04g00308 | 757 | Gene3D | - | 389 | 446 | - | - | |
| Cca04g00308 | 757 | SMART | FF_2 | 571 | 625 | IPR002713 | - | |
| Cca04g00308 | 757 | SMART | FF_2 | 638 | 693 | IPR002713 | - | |
| Cca04g00308 | 757 | SMART | FF_2 | 706 | 753 | IPR002713 | - | |
| Cca04g00308 | 757 | MobiDBLite | consensus disorder prediction | 106 | 150 | - | - | |
| Cca04g00308 | 757 | MobiDBLite | consensus disorder prediction | 8 | 47 | - | - | |
| Cca04g00308 | 757 | ProSiteProfiles | FF domain profile. | 571 | 625 | IPR002713 | - | |
| Cca04g00308 | 757 | SUPERFAMILY | FF domain | 565 | 631 | IPR036517 | - | |
| Cca04g00308 | 757 | Pfam | FF domain | 711 | 744 | IPR002713 | - | |
| Cca04g00308 | 757 | Pfam | FF domain | 577 | 622 | IPR002713 | - | |
| Cca04g00308 | 757 | Pfam | FF domain | 641 | 688 | IPR002713 | - | |
| Cca04g00308 | 757 | MobiDBLite | consensus disorder prediction | 177 | 212 | - | - | |
| Cca04g00308 | 757 | MobiDBLite | consensus disorder prediction | 106 | 159 | - | - | |
| Cca04g00308 | 757 | CDD | WW | 352 | 377 | IPR001202 | GO:0005515 | |
| Cca04g00308 | 757 | Gene3D | FF domain | 556 | 628 | IPR036517 | - | |
| Cca04g00308 | 757 | Gene3D | FF domain | 700 | 753 | IPR036517 | - | |
| Cca04g00308 | 757 | MobiDBLite | consensus disorder prediction | 1 | 91 | - | - | |
| Cca04g00308 | 757 | MobiDBLite | consensus disorder prediction | 735 | 757 | - | - | |
| Cca04g00308 | 757 | ProSitePatterns | WW/rsp5/WWP domain signature. | 404 | 429 | IPR001202 | GO:0005515 | |
| Cca04g00308 | 757 | MobiDBLite | consensus disorder prediction | 506 | 571 | - | - | |
| Cca04g00308 | 757 | Gene3D | FF domain | 629 | 699 | IPR036517 | - | |
| Cca04g00308 | 757 | PANTHER | TRANSCRIPTION ELONGATION REGULATOR 1 | 98 | 744 | IPR045148 | GO:0003712|GO:0070063 | |
| Cca04g00308 | 757 | Gene3D | - | 346 | 388 | - | - | |
| Cca04g00308 | 757 | MobiDBLite | consensus disorder prediction | 506 | 537 | - | - | |
| Cca04g00308 | 757 | Pfam | WW domain | 351 | 377 | IPR001202 | GO:0005515 | |
| Cca04g00308 | 757 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 346 | 379 | IPR001202 | GO:0005515 | |
| Cca04g00308 | 757 | MobiDBLite | consensus disorder prediction | 52 | 91 | - | - | |
| Cca04g00308 | 757 | SUPERFAMILY | WW domain | 351 | 381 | IPR036020 | GO:0005515 | |
| Cca04g00308 | 757 | CDD | WW | 409 | 431 | IPR001202 | GO:0005515 | |
| Cca04g00308 | 757 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 404 | 431 | IPR001202 | GO:0005515 | |
| Cca04g00308 | 757 | ProSitePatterns | WW/rsp5/WWP domain signature. | 352 | 377 | IPR001202 | GO:0005515 | |
| Cca04g00308 | 757 | PANTHER | TRANSCRIPTION ELONGATION REGULATOR HOMOLOG | 98 | 744 | - | - | |
| Cca04g00308 | 757 | SUPERFAMILY | WW domain | 403 | 435 | IPR036020 | GO:0005515 | |
| Cca04g00308 | 757 | SUPERFAMILY | FF domain | 630 | 699 | IPR036517 | - | |
| Cca04g00308 | 757 | ProSiteProfiles | FF domain profile. | 638 | 693 | IPR002713 | - | |
| Cca04g00308 | 757 | MobiDBLite | consensus disorder prediction | 187 | 212 | - | - | |
| Cca04g00308 | 757 | SUPERFAMILY | FF domain | 699 | 745 | IPR036517 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca04g00308 | K12824 | - | gmx:100816454 | 1184.47 |