Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00298 ATGAAAAGAGGATTCGGTTTTGGAGCGCTTCTCATTTCCTTCCGCAACTGTAACCCTCTCTTGCAGCCGCCACTCTCACTCCCCACCCTCCTTCGCGCCGTCAGATCTCTTTCTTCTCCGCCTTCCTCCGCCGCAGCCATGACCGGAGCTGGGAGTCTCGATGTGGAGTGGCCGGCGAAGCGCGTCAGGGACACTTTCATCAGCTTCTTCGAAGATAAAAATCACGTCAACTGGAAGTCCAGCCCCGTCGTTCCCTTCAACGACCCCACTCTTCTCTTCGCCAACGCTGGTATGAACCAGTACAAACCAATTTTCTTGGGAACTGCGGATCCTAACACTGCCTTGAGCAAACTCTCTCGTGCCTGCAATACGCAGAAGTGCATACGAGCAGGTGGTAAACACAATGATCTTGATGATGTAGGAAAGGATACCTACCATCACACCTTTTTTGAGATGTTGGGCAATTGGTCCTTTGGGGATTACTTTAAAGAAGAAGCCATTAGCTGGGCATGGGAGCTTCTAACCAAAGTTTATAAATTACCATCAGATCGCATTTACGCGACATATTTCGGTGGTGATGATAAGTTTGGTCTGGCCCCTGATTTTGAGGCTAGAGATATATGGCTAAAGTTTTTGCCTCCTGGACGTGTGCTTCCTTTTGGCTGTAAAGACAATTTCTGGGAGATGGGTGATACTGGTCCTTGTGGACCTTGCACTGAAATACATTTTGACAGAATTGGTAACCGTGATGCTGCATCATTGGTTAATAATGATGATCCTACCTGCATTGAGATATGGAACCTTGTCTTTATTCAGTTCAATAGGGAGGCTGATGGCTCTCTTAAACCTCTTCCTGCAAAGCACGTTGATACAGGCTTGGGTTTTGAACGTCTGACCTCCATACTACAGAACAAAATGAGCAATTATGACACTGATGTCTTCTTGCCTATCTTCGATGGTATTCAGCAGGCAACTGGTGCCAGACCATATTCGGGGAAAGTTGGAGCAGATGATGTAGATAAAGTTGACATGGCATACAGGGTTGTTGCAGATCACATAAGAACTCTTTCCTTTGCCATTGCTGATGGGTCTCGTCCTGGTAACGAAGGCCGTGAGTATGTTCTGCGACGTATACTCCGTCGGGCTGTTCGTTATGGACGTGAAGTTCTAAAAGCGAAGGAGGGATTTTTCAATGGGCTTGTAAATGTTGTGGTAAACGTGATGGGCGATGTTTTCCCTGAGCTAAAACAACAGGAAACGCAGATTCGAAATGTAATTGAAGAGGAGGAGGAAAGTTTTGGAAGAACCTTAATTAAGGGAATTGAGAAATTTGAGACAGCTGTTCGACATGTTCAAGGAAAGATACTGAGTGGGGAGGAAGCATTTGTTTTGTGGGATACATATGGGTTCCCATTAGACCTCACACAGCTGATGGCTGAAGAAAAAGGACTAGTTGTTGATGTCAAAGGTTTCGATAATGCTATGGAAGCTGCAAGAGAGAGATCCAGAAGTGCTCAAACAAAGCAAGCTGGTGGTGCCATTGTCATGGATGCTGATGCAACGTCCTCATTGCACAAAAGGGGCATTGCCCCAACAGATGATAGCTTCAAATATACTTGGTTCAAGGACCATGAAACTGTGGTAAAAGCAATATATATGGGTTCTGAGTTTGTTGATACTGTTAATACTGGTGATGATATTGGTGTAGTTCTTGAATCTACAAGCTTTTATGCTGAGCAAGGTGGTCAGATATTTGATACTGGATCACTTGATGGTCCACTTGCTTCATTTGAAGTTCGTAATGTTCAAGTTTATGGAGGCTTTGTTCTTCACATTGGTAATGGGACTGGTATCTCTGTTGGCGACAAAGTAGTATGCAAGGTTGATTATGGAAGACGTGCCATTATAGCCCCTAACCATACCTGCACGCACATGTTAAATTTTGCTCTTAGGGAAGTACTAGGGGATCATGTTGACCAGAAAGGTTCCATTGTTCTTCCTGAAAAATTGAGATTTGATTTTTCTCATGGCAAGCCTGTTGATGCTGACAATTTAAGGAGAATTGAATCAATTGTTAACGAGCAAATTAAAGCTGAATTGGATGTAAGTGCAAAAGAGGTAACTCTTGCTGAAGCCAAGCGTATCAATGGTTTGCGAGCTGTTTTTGGAGAAGTCTATCCAGATCCTGTTAGAGTTGTGTCTATTGGACAAAAAGTTGAGGATCTCCTTTCTGACCCCGGGAATGAAAAATGGTTATCTATATCTTCAGAATTATGCGGAGGCACCCATATTTCAAACACACGAGAGGCAAAAGCTTTTGCACTTTTATCTGAGGAGGGAATTGCAAAAGGCATCCGCAGAATAACAGCTGTCACAACTGATCGTGCTTATGATGCAATTAAAGTGGCTGATGAATTCGAGCAGCAAGTAGATGATGCGGCTAAATTAGAAAGAGGTTTGCTTGAAGAGAAAGTTTCATCATTGAAAAGCAATGTTGAAACTTTATCAATTCCTGCTGCCAAGAAAGCTGACATCAAGACCAAGATAGCCCAGCTTCAGGATCAAGTGAGAAAAGCACAAAAGCAGGTTGCTGAGGAAAATAAGCGTAAAGCTGTAACGATTACAATTGAGAAGGCTGAACTTGCTGCTTCAAATGGGAAAACTTTTTGCATATCTCGTGTTGATGTTGGTCTGGATGTGGCTGCAGTTCGTGAGGCTGTTACCAAAGTCGTGGACCAGAAGGGCTTATCTGTGATGGTTTTTAGCACAGATGAAGCTACAAACAAGGCTGTAGTTTGTGCTGGGGTGCCAGAAAAAGGAGATAAAGGTAAGCTGGACGTGGGAGAGTGGCTGAGTAATTCTTTGGGGCCTCTAAAAGGGAGATGTGGCAAGGGAAAAGGTGGTCTTGCAACGGGACAGGGTACAGATGCATCACATGTAAACGAGGCTATTGATCTTGCAGAAAACTTTGCGTCAATGAAATTGAGTTAA 2991 0.439 MKRGFGFGALLISFRNCNPLLQPPLSLPTLLRAVRSLSSPPSSAAAMTGAGSLDVEWPAKRVRDTFISFFEDKNHVNWKSSPVVPFNDPTLLFANAGMNQYKPIFLGTADPNTALSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAISWAWELLTKVYKLPSDRIYATYFGGDDKFGLAPDFEARDIWLKFLPPGRVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNRDAASLVNNDDPTCIEIWNLVFIQFNREADGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFLPIFDGIQQATGARPYSGKVGADDVDKVDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGREVLKAKEGFFNGLVNVVVNVMGDVFPELKQQETQIRNVIEEEEESFGRTLIKGIEKFETAVRHVQGKILSGEEAFVLWDTYGFPLDLTQLMAEEKGLVVDVKGFDNAMEAARERSRSAQTKQAGGAIVMDADATSSLHKRGIAPTDDSFKYTWFKDHETVVKAIYMGSEFVDTVNTGDDIGVVLESTSFYAEQGGQIFDTGSLDGPLASFEVRNVQVYGGFVLHIGNGTGISVGDKVVCKVDYGRRAIIAPNHTCTHMLNFALREVLGDHVDQKGSIVLPEKLRFDFSHGKPVDADNLRRIESIVNEQIKAELDVSAKEVTLAEAKRINGLRAVFGEVYPDPVRVVSIGQKVEDLLSDPGNEKWLSISSELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTTDRAYDAIKVADEFEQQVDDAAKLERGLLEEKVSSLKSNVETLSIPAAKKADIKTKIAQLQDQVRKAQKQVAEENKRKAVTITIEKAELAASNGKTFCISRVDVGLDVAAVREAVTKVVDQKGLSVMVFSTDEATNKAVVCAGVPEKGDKGKLDVGEWLSNSLGPLKGRCGKGKGGLATGQGTDASHVNEAIDLAENFASMKLS 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00298 996 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 730 788 IPR012947 GO:0004812|GO:0005524|GO:0043039
Cca04g00298 996 Pfam DHHA1 domain 850 990 IPR003156 GO:0003676
Cca04g00298 996 CDD AlaRS_core 59 305 - -
Cca04g00298 996 Hamap Alanine--tRNA ligase [alaS]. 57 995 IPR023033 GO:0004813
Cca04g00298 996 PANTHER ALANYL-TRNA SYNTHETASE 28 995 - -
Cca04g00298 996 Coils Coil 842 869 - -
Cca04g00298 996 Pfam tRNA synthetases class II (A) 62 630 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Cca04g00298 996 Gene3D - 629 805 - -
Cca04g00298 996 Gene3D - 882 991 - -
Cca04g00298 996 Coils Coil 803 823 - -
Cca04g00298 996 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 57 802 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Cca04g00298 996 SMART tRNA_SAD_4 730 789 IPR012947 GO:0004812|GO:0005524|GO:0043039
Cca04g00298 996 Gene3D - 536 628 - -
Cca04g00298 996 TIGRFAM alaS: alanine--tRNA ligase 62 973 IPR002318 GO:0000166|GO:0005737
Cca04g00298 996 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 310 510 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Cca04g00298 996 SUPERFAMILY ThrRS/AlaRS common domain 628 804 IPR018163 GO:0000166
Cca04g00298 996 PANTHER BNACNNG61840D PROTEIN 28 995 - -
Cca04g00298 996 Gene3D Bira Bifunctional Protein; Domain 2 58 306 IPR045864 -
Cca04g00298 996 PRINTS Alanyl-tRNA synthetase signature 135 146 IPR002318 GO:0000166|GO:0005737
Cca04g00298 996 PRINTS Alanyl-tRNA synthetase signature 263 274 IPR002318 GO:0000166|GO:0005737
Cca04g00298 996 PRINTS Alanyl-tRNA synthetase signature 290 303 IPR002318 GO:0000166|GO:0005737
Cca04g00298 996 PRINTS Alanyl-tRNA synthetase signature 347 363 IPR002318 GO:0000166|GO:0005737
Cca04g00298 996 PRINTS Alanyl-tRNA synthetase signature 371 384 IPR002318 GO:0000166|GO:0005737
Cca04g00298 996 SUPERFAMILY Translation proteins 555 628 IPR009000 -
Cca04g00298 996 SUPERFAMILY Class II aaRS and biotin synthetases 59 309 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00298 Cca-Chr4 2893919 2907355 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00298 K01872 - gmx:100788271 1743.01