Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00297 ATGGCGAAAGAGGGAAGCGACATTGATGAAGTGAACGACGCAATGGAAGGCGCGGGagaagaagaagaggaagaaaacgcggcacaggaggaaggtgacatggaagaagaagacgaggaGTATACTTTCAGGTTCAAAAATGGCATGAATCCATTGGACTTCATCGATAACAATGATTCCGGCGTTCAAACCTACCAGCGATTCGAGCGTCTTGAACAGGAAGCCCTCGCCGATAAAAAACGAAAAGCAACTGATCAATGCGAGAGTGAAGGACCACCTTCTAAGATGGCCAGGGAAGATGATATTTCTGGGGTAAAGATAGCTGAGATAATGGAAGCAATGAATTATTATGGTGTTCGCAAGAGATCGAGAAAGGTTAAAAAAAGAGGCAGGCGAAAAGGATCAAAGAATAAACTTGACCCTAAGCTAACACGAATGCTGGGCGATGCCACACTTCACTATGCATGTGGCCATTATGACAAGGCTAAAGCTGTGTTGCTTGAAGTTGTTAGGCTGGCACCAAATTTACCTGATTCGTATCACACCCTTGGACTTGTCTATAGTTCACTCCAGGATTATAAAAGAGCCATGGGTTTTTACATGATCGCTGCTCACTTGACTCCAAAAGATTCATCTCTTTGGAAAATGATTTTTACCTGGTCCATAGAACAAGGTTATATTGGTCAGGCCCGTCATTGTCTTTTAAAAGCAATAACAGCAGATCCCAAAGATGCTACTCTTAGAGGTCATCTTGCAAGGCTTTATGTTGAACTTGGAGATTATCAAAAAGCTGCTGTGGCATATGAGCAAGCATACCAACTTTGTTGTGAGAATGTTGATGCACTGAAAGCAGCTGCTAAGTTCTACAAAATATGTGGTCAAGTTGAATACTCTGTTCGCATTCTTGAAGACTATCTTAAGAGTCAACCTGACGGAGCAAATGCAGGCGTAGTTAATCTGCTGGGTACCATATTGATGGAAACTAAGGCACATGACAGAGCTCTGCAGTATATTGAACGTGCTCAGGTGGTAAATGCGGAGAAAGAATTGCCTTTAAATTTGAAAATTAAGGCCGGAATTTGTCATCTTCATCTCGGAAACATGGAGATGGCTCAGGTTCTCTTCAATGATTTGAAACCAGAGAATGCAAGCAACCATAGTGACTTGGTTACTGAGGTTGCAGACTCATTAGTGGGTCTTGAACATTATAATTCTGCTTTGAATTATTATCTGATGTTGGAACGAAATAGTGGAAATGAAAATGGTCTTCTGTATCTGAAAATTGCTAGATGTTATCTGTCCTTGAAAGAAAGGTCACAAGCAATTCTCTTTTTTTCTAAAGCCCTTAAAATGCTACAAGATGATGTTGATGCACGCATAAGTCTGGCTTCTCTTCTGCTTGAAGAGGGAAAAGAAGATGATGCCATTTCCTTGCTGTCTCCTCCAAAGGATTCTGACTCTGGAGAAGCGCATTCTGAAAAGTCAAATAGATGGTGGGTTGATGTAAGAATAAAACTGAAGCTCTGCAACATATATTGGAATAGAGGGACACTTGATGATTTTGTGGATGCACTTTTCCCTTTGATTCGTGAGTCATTGTATGTTGCAACTCTTCGACAAAAGGGTAAATCAAAAAGGCGACTTTCCAAAAGAGATCTGGTTGAAAGGATTAAGGTACTGGAGGGTCCGGAAAAGGATAATGTATTTCGAGGATTCAGGCCAGTAGCTGCACCATCTGATCTGTTGAAAGCTTCCAGGGCAAAAAAATTGCTCCAGAAGAAAGCAATCGAAAAGGAGAAAAGAAAAGCTGAGGCACTGGCCTCTGGATTTGACTGGCTAAGTGACGATTCAGATGATGAGCCTCAGAAAGAAAACAGAGAACCTCCCTTGTGTAATATTCTCAAAGATGAAGAACATCACCAGCTTATAATTGATTTGTGCAAGGCATTGGCATCCTTGCAAAGGTATTGGGAAGCACTGGAGATTATTAATCTCACTCTAAGATTGGCTCATTCATCTCTGTCTACTGAGAAGAAGGAGGAACTTCGATCTCTTGGAGCTCAAATGGCATACAACACCACTGATCCTAAACATGGGTTTGATTGTGTAAAATACATTGTTCAGCAACATCCACACAGTTTTGCAGCTTGGAATTGCTACTACAAGGTTATCGCAAGATTGGAAAACCGTGATACAAGACATTACAAATTTCTACGTTTCATGCAAGGAAAATTTGTGGATTGTGTGCCTCCTATCCTCATTTCTGGGCATCAGTTTACCTTATTTAGCCATCATCAAGATGCAGCGAGGAAATACCTTGAAGCTTATAAACTATTGCCAGAGAATCCATTGGTTAATCTTTGTGTTGGAACCGCCTTGATTAACTTAGCATTGGGTTTCAGACTTCAAAATAAGCATCAATGTGCTGTACAAGGTTTAGCATTCCTCTACAATAATTTGAGAATCTGCGAGAACAGCCAGGAATCACTGTACAACATAGCTCGGGCATATCATCATGTTGGTCTTTTAACTCTGGCGGCTTTGTATTATGAGAAAGTGATTGCTATTTGCCAGAGAGACTATCCGATTCCAAAACTTCCAAATGAGAATCCAGATGTCGTGGAAAATCTTAAACCTGGTTACTGCGATCTTCGCAGAGAGGCCGCATACAATTTGCATTTGATCTACAAAAGAAGTGGTGCTCTTGATCTTGCTAGGCAAGTTCTCAAAGATCATTGTACCTTGTGA 2748 0.4003 MAKEGSDIDEVNDAMEGAGEEEEEENAAQEEGDMEEEDEEYTFRFKNGMNPLDFIDNNDSGVQTYQRFERLEQEALADKKRKATDQCESEGPPSKMAREDDISGVKIAEIMEAMNYYGVRKRSRKVKKRGRRKGSKNKLDPKLTRMLGDATLHYACGHYDKAKAVLLEVVRLAPNLPDSYHTLGLVYSSLQDYKRAMGFYMIAAHLTPKDSSLWKMIFTWSIEQGYIGQARHCLLKAITADPKDATLRGHLARLYVELGDYQKAAVAYEQAYQLCCENVDALKAAAKFYKICGQVEYSVRILEDYLKSQPDGANAGVVNLLGTILMETKAHDRALQYIERAQVVNAEKELPLNLKIKAGICHLHLGNMEMAQVLFNDLKPENASNHSDLVTEVADSLVGLEHYNSALNYYLMLERNSGNENGLLYLKIARCYLSLKERSQAILFFSKALKMLQDDVDARISLASLLLEEGKEDDAISLLSPPKDSDSGEAHSEKSNRWWVDVRIKLKLCNIYWNRGTLDDFVDALFPLIRESLYVATLRQKGKSKRRLSKRDLVERIKVLEGPEKDNVFRGFRPVAAPSDLLKASRAKKLLQKKAIEKEKRKAEALASGFDWLSDDSDDEPQKENREPPLCNILKDEEHHQLIIDLCKALASLQRYWEALEIINLTLRLAHSSLSTEKKEELRSLGAQMAYNTTDPKHGFDCVKYIVQQHPHSFAAWNCYYKVIARLENRDTRHYKFLRFMQGKFVDCVPPILISGHQFTLFSHHQDAARKYLEAYKLLPENPLVNLCVGTALINLALGFRLQNKHQCAVQGLAFLYNNLRICENSQESLYNIARAYHHVGLLTLAALYYEKVIAICQRDYPIPKLPNENPDVVENLKPGYCDLRREAAYNLHLIYKRSGALDLARQVLKDHCTL 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00297 915 Gene3D Tetratricopeptide repeat domain 124 352 IPR011990 GO:0005515
Cca04g00297 915 Gene3D Tetratricopeptide repeat domain 353 552 IPR011990 GO:0005515
Cca04g00297 915 SUPERFAMILY TPR-like 317 424 IPR011990 GO:0005515
Cca04g00297 915 MobiDBLite consensus disorder prediction 1 42 - -
Cca04g00297 915 Coils Coil 20 40 - -
Cca04g00297 915 ProSiteProfiles TPR repeat profile. 422 455 IPR019734 GO:0005515
Cca04g00297 915 Pfam Tetratricopeptide repeat 226 273 - -
Cca04g00297 915 SUPERFAMILY TPR-like 152 478 IPR011990 GO:0005515
Cca04g00297 915 PANTHER TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED 15 914 IPR039340 GO:0006383
Cca04g00297 915 ProSiteProfiles TPR repeat profile. 245 278 IPR019734 GO:0005515
Cca04g00297 915 Gene3D Tetratricopeptide repeat domain 575 914 IPR011990 GO:0005515
Cca04g00297 915 ProSiteProfiles TPR repeat profile. 177 210 IPR019734 GO:0005515
Cca04g00297 915 MobiDBLite consensus disorder prediction 76 98 - -
Cca04g00297 915 Pfam Tetratricopeptide repeat 425 451 IPR019734 GO:0005515
Cca04g00297 915 Pfam Tetratricopeptide repeat 178 201 IPR019734 GO:0005515
Cca04g00297 915 Pfam Tetratricopeptide repeat 828 857 IPR019734 GO:0005515
Cca04g00297 915 SMART tpr_5 422 455 IPR019734 GO:0005515
Cca04g00297 915 SMART tpr_5 143 176 IPR019734 GO:0005515
Cca04g00297 915 SMART tpr_5 315 348 IPR019734 GO:0005515
Cca04g00297 915 SMART tpr_5 177 210 IPR019734 GO:0005515
Cca04g00297 915 SMART tpr_5 827 860 IPR019734 GO:0005515
Cca04g00297 915 SMART tpr_5 245 278 IPR019734 GO:0005515
Cca04g00297 915 MobiDBLite consensus disorder prediction 11 38 - -
Cca04g00297 915 SUPERFAMILY TPR-like 755 910 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00297 K15201 - gmx:100804533 1549.26