Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00296 ATGCTTGTAGCTCGAAACCTCTCCCCTTCAAAGCTTAAGCCACTCTTTTATCTATCGCTCCTTTCTGAATGCAGAAGCGATTACCGCTCAAATATCTTTTCATCCTTAATACCATACTCAAAATCCCATCTCCAGAACTTCCCAAGATTTTCTCCTCAACCATCATTTTGTTTGTTTAGGTTTTTCTCTTCACAACCTGCAGATTCAGCTACAAAACAGAATTTGCCCCTCTCTCGTGAAGGTAATTATGATGAAGTCACTTCCCAATCTCTTCATGTTTGCCCTGGCTGTGGGGTTTATATGCAAGATTCCAACCCTAAACACCCTGGTTATTTTATCAAACCCTCTGAGAAGGACTTGAATTATAGATTGTACACCAATCTTGAACCCGTTGCGCAAGAGCCTGAGTTCTCTAACTCTGTTAAAAGGGGAATTGTTATTGAACCGGAAAAGCTTAATGATGATGATGTAAACTTGGTAAAGAAACCTGGGAAGCCAGTGGTGTGTGCACGTTGTCATTCGTTGAGGCACTATGGGAAGGTAAAGGATCCGACGGTGGAAAACTTGCTACCTGATTTTGACTTTGATCACACAGTGGGTAGGAAGTTGGCATCAACAAGTGGGACACGATCTGTGGTGCTGATGGTTGTGGATGCTGTGGATTTTGATGGGTCGTTTCCAAGGAAGGTTGCAAAGTTGGTTTCTAAGACGATAGAGGATCATTCTGCTGCATGGAAGCAGGGTAAGTCAGGGAATGTGCCTAGAGTGGTGCTTGTGGTGACAAAGATTGACTTGTTGCCTAGCTCATTGTCACCAACAAGGTTGGAGCACTGGATTAGACAGAGAGCAAGAGAGGGTGGGATTAATAAGGTTACTAGTTTGCACATGGTGAGTGCACTGAGGGATTGGGGACTGAAGAATCTTGTGGATAATGTGGTTGATTTGGTGGGACCTAGAGGGAATGTGTGGGCTGTTGGGGCTCAGAATGCAGGGAAGAGTACCTTGATAAACTCTATAGGGAAGTATGCTGGAGGGAAGATTACACATCTGACTGAAGCACCTGTGCCAGGTACTACACTAGGCATTGTTAGAGTGGAGGGTGTTCTTCCAAGTCAAGCAAAGTTGTTTGATACACCCGGCCTTCTTCATCCTTACCAGATTACGACGAGGTTGACGAGGGAAGAGCAAAAGCTTGTTCATATGGGCAAGGAATTGAAACCTAGGACGTACAGAATTATGGTTGGTCATTCGATTCACATAGCTGGTCTAATGAGATTGGATATAGATGAAACGTCCCTGGATACTATTTATGTCACAGTGTGGGCATCTCCTTATCTTCCACTACATATGGGTAAAATTGAAAATGCGTGTAAAATGTTCCAAGATCATTTTGGGCAACAGTTACAGCCACCAATTGGAGAAAATCGAGTACAAGAACTGGGAAATTGGGTGAGAAGAGAAATCCATGTTAGTGGGAACAGTTGGGAGTCAAGTTCAGTAGACATTGCTGCTGCTGGCCTCGGTTGGTATGCCATTGGACTTAAAGGAGATGCAGTGTTAAGTGTTTGGACTTATGAAGGAGTTGATGTTGTTCTTCGCAATTCTTTAATACCCTATAGATCACATACTTTTGAAGTTGCAGGGTTTACTGTGTCCAAGATTGTGTCCCAGTCTGACCAAGCTCTAAATAAGTCACGGCCGCGAAATGACAAAAAGGCGAAGGGAATTGACTCAAAAGTGCCAACCAGTTTTGTTGAATCACGACTTTTGACTTCTGATTGA 1782 0.4355 MLVARNLSPSKLKPLFYLSLLSECRSDYRSNIFSSLIPYSKSHLQNFPRFSPQPSFCLFRFFSSQPADSATKQNLPLSREGNYDEVTSQSLHVCPGCGVYMQDSNPKHPGYFIKPSEKDLNYRLYTNLEPVAQEPEFSNSVKRGIVIEPEKLNDDDVNLVKKPGKPVVCARCHSLRHYGKVKDPTVENLLPDFDFDHTVGRKLASTSGTRSVVLMVVDAVDFDGSFPRKVAKLVSKTIEDHSAAWKQGKSGNVPRVVLVVTKIDLLPSSLSPTRLEHWIRQRAREGGINKVTSLHMVSALRDWGLKNLVDNVVDLVGPRGNVWAVGAQNAGKSTLINSIGKYAGGKITHLTEAPVPGTTLGIVRVEGVLPSQAKLFDTPGLLHPYQITTRLTREEQKLVHMGKELKPRTYRIMVGHSIHIAGLMRLDIDETSLDTIYVTVWASPYLPLHMGKIENACKMFQDHFGQQLQPPIGENRVQELGNWVRREIHVSGNSWESSSVDIAAAGLGWYAIGLKGDAVLSVWTYEGVDVVLRNSLIPYRSHTFEVAGFTVSKIVSQSDQALNKSRPRNDKKAKGIDSKVPTSFVESRLLTSD 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00296 593 Gene3D - 200 385 IPR027417 -
Cca04g00296 593 MobiDBLite consensus disorder prediction 560 579 - -
Cca04g00296 593 Pfam 50S ribosome-binding GTPase 322 394 IPR006073 GO:0005525
Cca04g00296 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 385 IPR027417 -
Cca04g00296 593 PANTHER GENETIC INTERACTOR OF PROHIBITINS 3, MITOCHONDRIAL 63 568 - -
Cca04g00296 593 CDD YqeH 169 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00296 Cca-Chr4 2873611 2876801 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00296 - - gmx:100787200 1074.69