Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00291 ATGAACATGAAGAACTTGAGCATCTCTTTGTGCATGCTTCTCATAGCTCTTGTGCGCTTAGGTGTTAGTGCACCCTCTAACTTCAACTATGGTGAAGCCCTTGACAAGAGTTTGATGTTCTTTGAAGCACAAAGGTCTGGTAAGTTACCACTTCAGCAACGAGTCAAGTGGCGTGGTGATTCTGGTCTCCAAGATGGTTTACAGCAAGGAGTAGACCTGGTGGGTGGTTATTATGATGCTGGTGATCATGTGAAGTTTGGGTTGCCAATGGCCTACAGTGTCACATTGCTTTCATGGGGAGCCATTGAGTTCAGCAAGGAAATCACAGACTTGAACCAAATAGGACACACATTATGGGCCATTAAATGGGGAACTGACTACTTTATCAAAGCACACACTCAGCCTAATGTTCTTTGGGGACAGGTGGGTGATGGAGTTTCTGATCATTACTGCTGGGAGCGTGCTGAAGACATGACGACTTCAAGAGGTGCCTATAAAATTGATGAACAACACCCTGGCTCAGATCTGgcaggtgaaactgcagctgcattggctgctgcagctatagctTTCAGGCCCTACAACTCCTCCTACTCTAGCTCCCTTCTAGTTCATGCAAAACAGCTCTTCACATTCGCAGATAGGTTCAGAGGTCTCTATGATGACTCCATATCAAATGCTCAGCAATTTTATACTTCGTCTGGTTACTCAGATGAATTGTTGTGGGCTGCGGCTTGGCTGCACCTAGCAACTGGTGATGAATACTACCTAAAGTATGTGGTGGACAATGGTGTGTATATGGGTGGAACTGGCTGGGCAGTAAAAGAGTTCTCTTGGGACAATAAATATGCTGGTGTGCAGATCCTCCTATCAAAGGTATTGCTAGAAGGAAAGGCTGGTTCTTACGCTGCTACACTAAAGCAATACCAGGCTAAGGCTGACTATTTTGCCTGCGCCTGCTTGCAAAAGAATGATGGTTACAATGTCCAGAAAACTCCAGGTGGCTTGCTATACGTGCGTGAATGGAACAACATGCAGTATGTTTCTTCTGCTGCATTTCTCTTAGCAGTTTACTCTAATTATCTCTCAGAAAACAGAGCACAGCTCAACTGTCCAGATGGACAAATTCAGCCTCAGGAGCTCCTCAGTTTTGTTAAGTCACAAGCTGACTATATCCTTGGTAAAAACCCAGCGGATATGAGCTACTTGGTAGGATATGGACCAAAATATCCTCTTTATGTTCATCACAGAGGGGCTTCCATTGCTTCAATCTTTTCTCTTCACAATGAGGTTGGCTGCACCCAAGGATTTGAGACATGGTATAACCGTGCTCAGCCAAATCCTAATGTCATCTGTGGTGGCCTCGTGGGTGGTCCTAATAAGAATGATGACTTCTCTGATGATAGATCCAATTATGAGCAAACTGAGCCTACACTTTCAGGTTCTGCTCCTCTTGTAGGCATCTTCGCTAAACTGCAGAGTTTATATGGTCAAATAGGTGAAGGTTACACCCATAATGGATCACCAGTTCCCCAGCAAAAAACACCTGGTACAAACCCGGGGAAAACAACAGTGTCTGAAATATCAGAAGGTGCCCCAGTTGAATTCCTTCACTCAATTAGCAGCTCATGGAATGTTGGAGGTGCAACTTATTACCGTCACAGGGTGATAATCAAGAACACTTCTTCAAAGCCAATCTCAGATCTTAAGTTGGTGATTAAGGATCTCTCAGGCACTTTATGGGGCCTCTCTCCAACAGAAGAAAAGAACACCTATGAACTTCCCCAATGGCACAAAGTCTTGAATCCTGGCTCCGAGTGTATTTTTGTATATGTACAAGGAGGACCCCAGGCTAAAGTATCGATCAAAAGCTTCCATTGA 1881 0.4343 MNMKNLSISLCMLLIALVRLGVSAPSNFNYGEALDKSLMFFEAQRSGKLPLQQRVKWRGDSGLQDGLQQGVDLVGGYYDAGDHVKFGLPMAYSVTLLSWGAIEFSKEITDLNQIGHTLWAIKWGTDYFIKAHTQPNVLWGQVGDGVSDHYCWERAEDMTTSRGAYKIDEQHPGSDLAGETAAALAAAAIAFRPYNSSYSSSLLVHAKQLFTFADRFRGLYDDSISNAQQFYTSSGYSDELLWAAAWLHLATGDEYYLKYVVDNGVYMGGTGWAVKEFSWDNKYAGVQILLSKVLLEGKAGSYAATLKQYQAKADYFACACLQKNDGYNVQKTPGGLLYVREWNNMQYVSSAAFLLAVYSNYLSENRAQLNCPDGQIQPQELLSFVKSQADYILGKNPADMSYLVGYGPKYPLYVHHRGASIASIFSLHNEVGCTQGFETWYNRAQPNPNVICGGLVGGPNKNDDFSDDRSNYEQTEPTLSGSAPLVGIFAKLQSLYGQIGEGYTHNGSPVPQQKTPGTNPGKTTVSEISEGAPVEFLHSISSSWNVGGATYYRHRVIIKNTSSKPISDLKLVIKDLSGTLWGLSPTEEKNTYELPQWHKVLNPGSECIFVYVQGGPQAKVSIKSFH 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00291 626 SMART CBM49_2 534 614 IPR019028 GO:0030246
Cca04g00291 626 PANTHER ENDOGLUCANASE 5 8 579 - -
Cca04g00291 626 PANTHER ENDO-1,4-BETA-GLUCANASE 8 579 - -
Cca04g00291 626 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 391 417 IPR018221 -
Cca04g00291 626 Pfam Carbohydrate binding domain CBM49 535 613 IPR019028 GO:0030246
Cca04g00291 626 Pfam Glycosyl hydrolase family 9 30 488 IPR001701 GO:0004553|GO:0005975
Cca04g00291 626 Gene3D - 26 496 IPR012341 GO:0005975
Cca04g00291 626 SUPERFAMILY Six-hairpin glycosidases 26 498 IPR008928 GO:0005975
Cca04g00291 626 MobiDBLite consensus disorder prediction 503 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00291 Cca-Chr4 2794535 2799400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00291 28 626 Glycoside Hydrolase AT1G48930 69.449 0.0 829
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00291 K01179 - gmx:100802420 1151.35