Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00288 ATGGCGACTCTGCAATTCACCTTCACCGACTCAACCTCCTCCTTCAGGTCTTCTTTACCTTCCTCGCGAGCTTCCTCTCGAAGCCGAACCCGAAGCCTCATTGTCAAAGCCTCTTCTATCGACTTCTCCAGAACCAGAAGACGCTTCATCGCCGAAACCGCCGCAATCTCCGTCTCGCTCCCTCACTTCGCGCCGGCCAGAGCCGAAGAAGCGCTTTCCGAGTGGGAGAGAGTTTACCTCCCTATCGACCCCGGCGTCGTGCTTCTCGACATCGCTTTTGTCCCCGACGACCCCAACCACGGTTTTCTTCTCGGGACGAGACAAACCATTCTGGAGACGAAAGATGGAGGAAACACTTGGGCTCCGCGTTCGATTCCCTCTGCCGAAGACGAGGATTTCAATTACCGCTTCAATTCTATTAGCTTCAAAGGGAAGGAAGGTTGGATAGTTGGAAAACCTGCGATTCTTTTGTACACTGCTGATTCTGGAGAAAGTTGGGAGAGGATTCCTCTCAGTGCTGAACTTCCGGGGGATATGGTGTACATAAAGGCGACTGGTGAGAAGAGTGCAGAGATGGTGACTGACGAAGGTGCGATATATGTCACTGCTAACAGAGGTTACAACTGGAGGGCTGCTGTCCAGGAAACTGTGTCAGCTACTCTTAACAGAACAGTTTCTAGTGGTATTAGTGGTGCAAGTTATTACACTGGGACTTTCAATACTGTCAATCGCTCTCCAGATGGAAGGTATGTTGCAGTCTCAAGTAGGGGCAACTTCTACTTAACCTGGGAGCCTGGTCAGCCATTCTGGCAGCCTCATAATAGAGCAGTTGCCAGAAGAATCCAGAACATGGGATGGAGAGCTGATGGTGGTCTGTGGCTTCTTGTTCGTGGAGGCGGTCTTTATCTCAGCAAGGGCACAGGGTTAACTGAAGAATTTGAGGAGGTTCCTGTTCAAAGCCGAGGTTTTGGTATTCTTGATGTGGGATATCGTTCATCGGAGGAGGCTTGGGCAGCAGGAGGAAGTGGTATTCTCTTGAGAACTACTAATGGTGGCAAGTCATGGATCCGTGACAAAGCTGCTGACAACATTGCTGCAAATTTATACTCAGTGAAGTTCCTTGATGACAAGAAGGGATTTGTATTGGGGAATGATGGAGTCTTGCTTCGCTACCTTGGATAG 1182 0.4992 MATLQFTFTDSTSSFRSSLPSSRASSRSRTRSLIVKASSIDFSRTRRRFIAETAAISVSLPHFAPARAEEALSEWERVYLPIDPGVVLLDIAFVPDDPNHGFLLGTRQTILETKDGGNTWAPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTADSGESWERIPLSAELPGDMVYIKATGEKSAEMVTDEGAIYVTANRGYNWRAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGLTEEFEEVPVQSRGFGILDVGYRSSEEAWAAGGSGILLRTTNGGKSWIRDKAADNIAANLYSVKFLDDKKGFVLGNDGVLLRYLG 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00288 393 PANTHER PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC 43 393 - -
Cca04g00288 393 PIRSF Photosystem_II_Ycf48-like 37 393 IPR016705 -
Cca04g00288 393 Pfam Photosynthesis system II assembly factor YCF48 70 391 IPR028203 -
Cca04g00288 393 SUPERFAMILY Oligoxyloglucan reducing end-specific cellobiohydrolase 74 392 - -
Cca04g00288 393 Gene3D - 132 370 IPR015943 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00288 - - gmx:100810566 703.36