Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00283 ATGAGAGGCCTTGTGTGGAGCACGAAAGCGTTTGCTCGGAAGTTGCTGTTCCATGGAATTGGAAGGAACGCTCGTTCATACAGTCTCGTCCCAATGGTGATCGAACACTCTTCCCGAGGAGAGAGGGCTTACGACATCTTCTCGCGCCTTCTGAAGGAGCGCATTATCTGCATCAACGGACCCATCTCCGACGACACCGCTCACGTCGTCGTTGCGCAGCTCCTCTTCCTCGAATCCGAAAACCCTTCCAAACCCATCCACATGTACCTCAACTCCCCCGGTGGCGCTGTCACCGCAGGGCTTGCTATTTATGATACAATGCAGTATATTCGATCTCCAGTCAATACAATTTGTTTGGGTCAAGCTGCATCAATGGGTTCTCTCCTATTGGCTGCTGGTGCCAAGGGTGAGAGGCGAGCGCTTCCAAATGCAACGATCATGATTCACCAGCCTTCTGGTGGTTATAGTGGCCAGGCAAAGGATATTGCAATTCACACCAAGCAGATTGTTCGGGTTTGGGATTCCTTGAATGAGTTGTATGCCAAGCATACGGGCCAGTCGGTTGAGGTTATTCAGACAAACATGGACAGGGATAACTTTATGACTCCCCAGGAGGCCAAGGAGTTTGGGATCATTGACGAGGTTATCGATCAGAGACCCATGACTTTGGTTTCTGATGCTGTTGGCAATGAAGGCAAAGATAAAGGTTCGAATTAG 717 0.5007 MRGLVWSTKAFARKLLFHGIGRNARSYSLVPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPIHMYLNSPGGAVTAGLAIYDTMQYIRSPVNTICLGQAASMGSLLLAAGAKGERRALPNATIMIHQPSGGYSGQAKDIAIHTKQIVRVWDSLNELYAKHTGQSVEVIQTNMDRDNFMTPQEAKEFGIIDEVIDQRPMTLVSDAVGNEGKDKGSN 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00283 238 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 9 237 - -
Cca04g00283 238 CDD S14_ClpP_2 45 215 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cca04g00283 238 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 29 219 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cca04g00283 238 ProSitePatterns Endopeptidase Clp histidine active site. 138 151 IPR033135 -
Cca04g00283 238 Pfam Clp protease 39 218 IPR023562 -
Cca04g00283 238 ProSitePatterns Endopeptidase Clp serine active site. 116 127 IPR018215 -
Cca04g00283 238 PRINTS Clp protease catalytic subunit P signature 45 60 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cca04g00283 238 PRINTS Clp protease catalytic subunit P signature 85 105 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cca04g00283 238 PRINTS Clp protease catalytic subunit P signature 116 133 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cca04g00283 238 PRINTS Clp protease catalytic subunit P signature 137 156 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cca04g00283 238 PRINTS Clp protease catalytic subunit P signature 194 213 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cca04g00283 238 SUPERFAMILY ClpP/crotonase 37 220 IPR029045 -
Cca04g00283 238 Gene3D - 21 223 - -
Cca04g00283 238 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 9 237 IPR023562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00283 Cca-Chr4 2729768 2731750 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00283 K01358 - gmx:100791303 427.172