Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00273 ATGGCTTTGTTTTCAGTTTTGTTAAATTttgttgttcttcttctgcttcttatatcttTCACCAAACAAACTTTAGGTGTGTCATTATTGGCAGAGCAAGAAGCAGATAGAGTCTATGAATTACCAGGACAACCTGATGTTATGTTTAAACACTATGCCGGTTACATCACTGTCAATAAAACTCATGGAAGAGCATTGTTTTACTGGTTTTTTGAAGCCACTCATACACCACAACAACAACCTCTTCTCTTATGGCTCAATGGAGGACCTGGTTGCTCGTCCATTGCCTTTGGAGCAGCACGAGAGCTTGGTCCATTTCTTGTGAAAGACAAAGAACGCCTCGAACTTAACAAATTCTCTTGGAACAGAGTTGCAAACATCATATTCTTGGAAGCACCAGTTGGTGTAGGCTTTTCTTACACTAACAATTCCAAAGATTTACGTGAGCTTGGAGATCGTGTTTCTGCTATTGATAACTATGTCTTCTTGACTGGTTGGTTCCAAAGGTTTACAAGCTTCAAATCTCACGATTTTTATATTGCAGGAGAGAGCTATGCAGGACATTATGTTCCACAACTTGCTGAACTTATCTATGAAGGAAACAAAGATCCCAAAAAAGACTCTTACATAAATCTCAAGGGATTCATGGTGGGAAATGCTGTATTGAATGATCTTGCAGATACAAAGGGCTTGATTGATTATGCTTGGAGTCATGCCATCATCTCAGACCATGTATACCATGGAATAGTACAAGATTGTGATTTTAGTGTGGAGAACCAAACAAGGGATTGTGACTTGAATATTGCTAAGTTATTAAAATCTTATTCTGATATTGATATATTCAGCATTTACTCTCCCATTTGCCTCGATAATCATCGAAGAGCAGTTTCATCAACACTTGTCGTTACTCCTCGTCTTCTCACGCGACATGATCAATGGCATAAGCTAGCATCAGGATACGATCCCTGTACAGAAGATTACATACGAAAATATTTCAATAATAAGGATGTTCAGAAAGCCCTCCATGCCAATATCACCAACTTGTCTTATGCATATTCCCTTTGCAGAGAAATGGAATGA 1080 0.3759 MALFSVLLNFVVLLLLLISFTKQTLGVSLLAEQEADRVYELPGQPDVMFKHYAGYITVNKTHGRALFYWFFEATHTPQQQPLLLWLNGGPGCSSIAFGAARELGPFLVKDKERLELNKFSWNRVANIIFLEAPVGVGFSYTNNSKDLRELGDRVSAIDNYVFLTGWFQRFTSFKSHDFYIAGESYAGHYVPQLAELIYEGNKDPKKDSYINLKGFMVGNAVLNDLADTKGLIDYAWSHAIISDHVYHGIVQDCDFSVENQTRDCDLNIAKLLKSYSDIDIFSIYSPICLDNHRRAVSSTLVVTPRLLTRHDQWHKLASGYDPCTEDYIRKYFNNKDVQKALHANITNLSYAYSLCREME 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00273 359 Gene3D alpha/beta hydrolase 32 289 IPR029058 -
Cca04g00273 359 Gene3D - 323 358 - -
Cca04g00273 359 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185|GO:0006508
Cca04g00273 359 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185|GO:0006508
Cca04g00273 359 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Cca04g00273 359 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 35 27 356 - -
Cca04g00273 359 ProSitePatterns Serine carboxypeptidases, serine active site. 180 187 IPR018202 GO:0004185
Cca04g00273 359 Pfam Serine carboxypeptidase 43 356 IPR001563 GO:0004185|GO:0006508
Cca04g00273 359 SUPERFAMILY alpha/beta-Hydrolases 33 355 IPR029058 -
Cca04g00273 359 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 27 356 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00273 Cca-Chr4 2646656 2649710 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00273 K16297 - gmx:100799746 529.25