Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00264 ATGGTTCAACCGGCGGTGACTCAGTTCCTGAACTCCGTCCTCTCCCAGCGCGGCCCCTCCGCCGTCCCGTATTCGGAGGACACAAAGTGGCTCATCCGGCAGCAACTGGTGTCCCTCACCACCGCCTTCCCCTCCCTCGAACCCAAAACGGCGTCGTTCACGCACAACGACGGTCGCTCGGTGAACCTCCTCCAAGCCGAAGGCACCATCCCCATGACCTTCCAAGGCGTCACGTACAACATCCCCGTCATAATCTGGCTCATGGAATCTTACCCTCGCCACCCTCCCTGCGTCTACGTCAACCCCACGCGCGACATGATCATCAAGCGCCCCCACCCTCACGTTAACCCTTCAGGCCTAGTCTCCGTCCCTTACCTTCACGATTGGGTCTACCCTGGCTCCAACCTCGTCGATCTCGTCCTCGATCTCAGCCTCCGCTTCGGTCGCGACCCTCCCCTATATTCCCAACGCAGAcctaaccctaaccccaaccctaaccctagccctaacccCAATCCTCCTCCCAATTTTGGAAACTCCCCTTCTAGTTTTGGAAGTGCACACGGCCACTCCCAACCTCCTAGGACTTACCCTCCCAGGTCTTACCCTCCTTCCCCTTACCCTGCTCCTAGGGTTCAGTCCACGGAGGATCCTTCCGAGGTGTTTAAGCGAAACGCGATTAACAAGCTTGTGGAGATGGTGCACGGCGATGTTGCTTCCCTAAGGAAGACGCGGGAGGCTGAGATGGAGGGGCTGTTCACCTTGCAGGGCGTGCTGAAGCAGCGGGAGGAGAGCCTCAACGGCGGTTTGAAGGAGATGCAGGCGGAGATGGAGGCGCTGGAGCAGCAGCTGCAGATGGTGTTGATGAACACCGATGTTTTGGAAGGGTGGTTGAGGGACAACCAGGGGAAGAAGATGGCGGGCTTGGAGAATCCCGAGGATGCGTTTGACTGTGTCGATGTGCTATCCAAGCAGATGCTGGATTGCACTGCGGCGGATTTGGCCATTGAGGACACGCTTTACGCCTTGGATAAGGCGCTTCAGGTGGGGGCTGTGCCGTTTGATCAGTACTTGAGGAGTGTGAGGGCGCTGTCCCGGGAGCAATTCTTTCACCGCGCCACCGCCGCCAAGGTTAGGGCAGCACAGTTGCAAGCTCAGGTTGCCAATATGGCTGCTCGGACTCAACATTATGGTAGCTGA 1200 0.5642 MVQPAVTQFLNSVLSQRGPSAVPYSEDTKWLIRQQLVSLTTAFPSLEPKTASFTHNDGRSVNLLQAEGTIPMTFQGVTYNIPVIIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVNPSGLVSVPYLHDWVYPGSNLVDLVLDLSLRFGRDPPLYSQRRPNPNPNPNPSPNPNPPPNFGNSPSSFGSAHGHSQPPRTYPPRSYPPSPYPAPRVQSTEDPSEVFKRNAINKLVEMVHGDVASLRKTREAEMEGLFTLQGVLKQREESLNGGLKEMQAEMEALEQQLQMVLMNTDVLEGWLRDNQGKKMAGLENPEDAFDCVDVLSKQMLDCTAADLAIEDTLYALDKALQVGAVPFDQYLRSVRALSREQFFHRATAAKVRAAQLQAQVANMAARTQHYGS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00264 399 ProSiteProfiles UEV domain profile. 13 157 IPR008883 GO:0015031|GO:0036211
Cca04g00264 399 PANTHER TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED 6 394 - -
Cca04g00264 399 MobiDBLite consensus disorder prediction 196 211 - -
Cca04g00264 399 SUPERFAMILY Endosomal sorting complex assembly domain 320 380 IPR037202 -
Cca04g00264 399 Pfam Vps23 core domain 315 377 IPR017916 -
Cca04g00264 399 SUPERFAMILY UBC-like 15 153 IPR016135 -
Cca04g00264 399 ProSiteProfiles Steadiness box (SB) domain profile. 320 388 IPR017916 -
Cca04g00264 399 MobiDBLite consensus disorder prediction 152 218 - -
Cca04g00264 399 Gene3D - 321 381 - -
Cca04g00264 399 PANTHER PROTEIN ELC 6 394 - -
Cca04g00264 399 MobiDBLite consensus disorder prediction 156 178 - -
Cca04g00264 399 Pfam UEV domain 33 153 IPR008883 GO:0015031|GO:0036211
Cca04g00264 399 Coils Coil 263 290 - -
Cca04g00264 399 Gene3D Ubiquitin Conjugating Enzyme 1 154 IPR016135 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00264 K12183 - gmx:100778834 626.32