Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00260 ATGGAACTGACATGGTTGAGTGCCATTCTGGTCGGGGCTGGTTATCTTGCTTTCGGTTACTTCATTGGTTCTCAGTATCCCCCTCGTTTCCTCTTCTCTCATAAACTGTTGACTAAACATAAAGATGATGATTCACTTCTCAATGACACCGATAATAAGAAGAGGAATAGTAAGTCCAAACTCAAAGACCCACTTGAGATTGAAAAGCTCGCTAATATTCTCGATGATTTTAAGATGATACTCGTTGTCAGGAATGATCTTAAAATGGGTAAAGGGAAGATTGCTGCTCAATGCAGTCATGCAACTTTAGGCCTTTATAAAAAGCTCCTTCATCGAGCACCAAAGGCTTTGAATAGGTGGGAGATGTCAGCGCAGCCTAAGGTTGTTGTCAAAATTGAAAGTGAAGAGGATATGCTGGCTTTGCAAGAAAGTGCTAAATCTCTGAAGTTACCTACCCATATCACAATTGATGCTGGCAGAACACAGATTGCACCAAATTCCAGAACAGTGATGGCAATTCTCGGACCTGTTGAAGTGGTAGATGAGGTAACAGGTGGACTGAAACTTCTTTAG 573 0.4154 MELTWLSAILVGAGYLAFGYFIGSQYPPRFLFSHKLLTKHKDDDSLLNDTDNKKRNSKSKLKDPLEIEKLANILDDFKMILVVRNDLKMGKGKIAAQCSHATLGLYKKLLHRAPKALNRWEMSAQPKVVVKIESEEDMLALQESAKSLKLPTHITIDAGRTQIAPNSRTVMAILGPVEVVDEVTGGLKLL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00260 190 CDD PTH2 77 190 IPR002833 GO:0004045
Cca04g00260 190 PANTHER PEPTIDYL-TRNA HYDROLASE 2 3 190 IPR002833 GO:0004045
Cca04g00260 190 PANTHER OSJNBA0060D06.11 PROTEIN 3 190 - -
Cca04g00260 190 TIGRFAM arch_pth2: peptidyl-tRNA hydrolase 78 190 IPR002833 GO:0004045
Cca04g00260 190 Pfam Peptidyl-tRNA hydrolase PTH2 77 190 IPR002833 GO:0004045
Cca04g00260 190 Gene3D Bit1 75 190 IPR023476 -
Cca04g00260 190 SUPERFAMILY Peptidyl-tRNA hydrolase II 75 190 IPR023476 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00260 Cca-Chr4 2536654 2540964 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00260 K04794 - gmx:100527794 347.821