Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00250 ATGAGGCCTCAGAGAGCTTCGATCCACCACCTCACCACATGGGTCAGGCGACAACCCCCAAAGGTCAAGGCTTTTCTCGCCGTCGTTTCCGGCATGGCGGCTCTCGTGCTCCTCCGCTTCATCGTTCACGATCACGACAACCTCTTCGTCGCCGCCGAGGCTGTCCACTCCCTCGGAATTTCCGTCCTCATCTATAAGCTCATGAAGGAGAAGACCTGTGCTGGGTTATCACTCAAATCCCAGGAATTAACAGCTATCTTTTTAGCTGTTAGGCTGTACTGCAGTTTTGTCATGGAATATGATATCCACACCGTACTTGATTTGTCTACTTTCATAACAACGCTGTGGGTTATATATATGATTCGTTTTAAACTGAAGGCCAGTTACATGGAGGAGAAGGATAACTTTGCAATATACTATGTGGTGGTACCCTGTGCTGTGTTAGCCTTGCTTATTCATCCATCAACTTCTCATCATATAATAAACAGGATTTTTTGGGCGTTCTGTGTATATCTGGAAGCTGTCTCAGTATTACCCCAATTGCGGGTCATGCAGAACACCAAGATTGTTGAGCCATTCACAGCTCATTACGTATTTGCACTGGGTGTTGCAAGATTCTTGAGCTGTGCTCATTGGGTTCTTCAGGTGTTAGATAGCCGTGGACATTTGTTGGTAGCCTTGGGGTATGGTTTATGGCCATCGATGGTTCTTATCTCAGAAATTGTGCAGACCTTCATCTTAGCAGATTTCTGTTACTATTATGTCAAAAGTGTTTTTGGGGGACAGCTTGTTCTACGTCTTCCTTCTGGAGTGGTGTGA 819 0.4579 MRPQRASIHHLTTWVRRQPPKVKAFLAVVSGMAALVLLRFIVHDHDNLFVAAEAVHSLGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHTVLDLSTFITTLWVIYMIRFKLKASYMEEKDNFAIYYVVVPCAVLALLIHPSTSHHIINRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQLVLRLPSGVV 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00250 272 PRINTS ER lumen protein retaining receptor signature 48 67 IPR000133 GO:0006621|GO:0016021|GO:0046923
Cca04g00250 272 PRINTS ER lumen protein retaining receptor signature 75 95 IPR000133 GO:0006621|GO:0016021|GO:0046923
Cca04g00250 272 PRINTS ER lumen protein retaining receptor signature 166 186 IPR000133 GO:0006621|GO:0016021|GO:0046923
Cca04g00250 272 PRINTS ER lumen protein retaining receptor signature 188 202 IPR000133 GO:0006621|GO:0016021|GO:0046923
Cca04g00250 272 PRINTS ER lumen protein retaining receptor signature 202 220 IPR000133 GO:0006621|GO:0016021|GO:0046923
Cca04g00250 272 Pfam ER lumen protein retaining receptor 72 214 IPR000133 GO:0006621|GO:0016021|GO:0046923
Cca04g00250 272 PANTHER ER LUMEN PROTEIN-RETAINING RECEPTOR C28H8.4-RELATED 1 271 - -
Cca04g00250 272 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR 1 271 IPR000133 GO:0006621|GO:0016021|GO:0046923
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00250 Cca-Chr4 2435716 2439174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00250 5 272 Miscellaneous Gene Families AT2G21190 87.313 3.95e-178 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00250 - - gmx:100803652 527.709