Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00249 ATGGGAAGCGTAGGTGTTTTGAAAGATGCCACAAGAAAGCAGCGAGTGAACCCCGGGAAGGCTACCATATTAGCTCTTGGCAAGGCTTTCCCTCACCAGCTTGTCATGCAAGAGTATTTAGTTGACGGATATTTCAGGGACACAAACTGTGACAACCCTGAACTCAAGCAGAAGCTCGCTAGACTTTGCAAAACAACCACGGTGAAAACAAGGTACGTGGTTATGTCAGAGGAGATACTGAAAAAGTATCCAGAACTTGCGGCTGAAGGCATCCCCACAGTGAAGCAACGGCTGGAGATATGCAACGAGGCAGTGACAGAAATGGCCATCGAAGCTTCCCAAGCTTGCATAAAAAACTGGGGTGGATCCTTATCAGACATAACACACTTGGTTTACGTGTCATCTAGTGAAGCAAGACTACCAGGTGGTGACCTTTACCTTGCCAAAGGACTTGGAATGAGCCCTGATACTCAACGAGTCATGCTCTATTTCGCTGGCTGCTCTGGAGGTGTGGCTGGCCTACGTGTTGCAAAAGACATAGCTGAGAACAACCCTGGAAGCCGAGTGCTTCTTGCTACCTCAGAAACTACAATCATTGGGTTCAAGCCACCAAGTGCAGATAGGCCTTATGATCTTGTTGGGGTGGCACTCTTTGGGGATGGTGCTGGTGCCATGATAATTGGTTCAGACCCAGTATTGGAGTCTGAGAAGCCTCTCTTTGAGCTTCACACTGCAGTTCAGGAGTTTTTGCCACACACTGCGAAGAAAATTGATGGGAGGTTGACAGAAGAGGGGATAAGCTTCCAGCTAGCAAGGGAGCTTCCTCAAATAATTGAGGACAATGTTGAAGGGTTTTGTGACAAACTAATGAGTGTTGCTGGGGTTAAGAATAAGGAGTACAACAAGATGTTTTGGGCTGTGCATCCAGGGGGGCCTGCCATCTTGAACCGCATTGAGAAGAGGCTTGATTTGGTGCCAGAGAAGCTGAGTGCAAGTAGAAGGGCTCTCATGGATTATGGCAATGCTAGCAGTAATACCATTGTGTATGTGCTGGAGTATATGATGGAGGAGGGACTCAAGATTAGAAAGAATGGCAGAGGAGATGCTGAATGGGGCTTGATACTTGCATTTGGACCCGGTATTACATTTGAGGGAATACTGGCAAGAAACTTGTGTGCTTGA 1182 0.4738 MGSVGVLKDATRKQRVNPGKATILALGKAFPHQLVMQEYLVDGYFRDTNCDNPELKQKLARLCKTTTVKTRYVVMSEEILKKYPELAAEGIPTVKQRLEICNEAVTEMAIEASQACIKNWGGSLSDITHLVYVSSSEARLPGGDLYLAKGLGMSPDTQRVMLYFAGCSGGVAGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSADRPYDLVGVALFGDGAGAMIIGSDPVLESEKPLFELHTAVQEFLPHTAKKIDGRLTEEGISFQLARELPQIIEDNVEGFCDKLMSVAGVKNKEYNKMFWAVHPGGPAILNRIEKRLDLVPEKLSASRRALMDYGNASSNTIVYVLEYMMEEGLKIRKNGRGDAEWGLILAFGPGITFEGILARNLCA 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00249 393 Gene3D - 3 238 IPR016039 GO:0016746
Cca04g00249 393 SUPERFAMILY Thiolase-like 11 234 IPR016039 GO:0016746
Cca04g00249 393 CDD CHS_like 21 387 - -
Cca04g00249 393 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 14 391 IPR011141 GO:0009058|GO:0016747
Cca04g00249 393 Pfam Chalcone and stilbene synthases, C-terminal domain 241 391 IPR012328 -
Cca04g00249 393 PIRSF PKS_III 6 392 IPR011141 GO:0009058|GO:0016747
Cca04g00249 393 Pfam Chalcone and stilbene synthases, N-terminal domain 11 231 IPR001099 -
Cca04g00249 393 Gene3D - 239 390 IPR016039 GO:0016746
Cca04g00249 393 PANTHER BNAA09G41780D PROTEIN 14 391 - -
Cca04g00249 393 SUPERFAMILY Thiolase-like 238 389 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00249 Cca-Chr4 2432122 2434549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00249 89 378 Miscellaneous Gene Families AT4G34250 24.611 3.21e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00249 - - vun:114168705 719.539