Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00246 ATGGAGGGGAGGAAGATAAGTGGTGGAAGCGGACAGGTTCTAGACGGTTCCAATATTATGGAGTTGGTTGGAAACGACCATGTTTTCACCACCTTCGTCGACCATAAGTTTCACGAGTTAGATAGAGACAGAGATGGTAAACTCTCTGTGAAAGAGCTTCAACCTGCTGTTGCTGACATAGGTGCTGCTCTTGGTTTGCCTTCTCAAGGCACTACTTCTCATTCTGATCACATCTATTCCCAGGTGTTGAATGAATTCACACATGGGAAGCTGGAAAAAGTGAGCAAGACTGAGTTCAAAGAGGTTCTCTCTGACATTCTATTGGGTATGGCTGCTGGACTCAAGCGTGACCCAATTGTGATACTTCGCATTGATGGGGAAGATCTTCTCGAATTTCTTAATGGTTCAACTTATGAAGCTGAAATAACATCCATATTCTCTCAGATTGAATCTCCTCACAGATCTCTTCATCACCATATACTTGAAGCTCTGGGCAAGCTCACTGTTGATCATGGGATTCCTCCTACCTCAGATTCTTGGGTTTATAACAACATTGTGGAACCGGCACTGCTATCTCTAGATGGCTCTGATTTGGATAAGCCCGTTTCTCAAGAGACATTTTTGGAGGAATTCAAGATGGTGGCATTGGGTGTGGCTAAGCGTCTAAAGGAACAACCTGTCATAGTTGCACACAGTGAGAACACCTTTGATGGAAGTGGTGTTAAGAGACTATTATCCAACAAGTTTGAATTGGACAAGACTTTGAACTCAGCTTTAGAGACTTTGCCTAAAGATCGTAATGGAAAGATGTCAAAGGAGTATCTACGGGTGGCGCTGGACACCGTGGCTCCATCTGCAGGTTTACCTCCAGTTGGTGCAATTCAAGAGATGGATAATGTTATTGGTGAAGTGTTTAAGATGGTGAATGCAGATGATGGGAAGACGGTGAAAGAAGAGGATTTGAAGAAAATTTTAACTGAAATACTGGGGAGCATCATGTTGCAATTGGAGGGAAATCCAATATCAGTTTCTTCAAATTCGGTGGTGCACGAGCCTCTAGACTCGTCCTCTACACTTCTGCAACCATCACCTAGTGAAACTGAAGCATAG 1110 0.4351 MEGRKISGGSGQVLDGSNIMELVGNDHVFTTFVDHKFHELDRDRDGKLSVKELQPAVADIGAALGLPSQGTTSHSDHIYSQVLNEFTHGKLEKVSKTEFKEVLSDILLGMAAGLKRDPIVILRIDGEDLLEFLNGSTYEAEITSIFSQIESPHRSLHHHILEALGKLTVDHGIPPTSDSWVYNNIVEPALLSLDGSDLDKPVSQETFLEEFKMVALGVAKRLKEQPVIVAHSENTFDGSGVKRLLSNKFELDKTLNSALETLPKDRNGKMSKEYLRVALDTVAPSAGLPPVGAIQEMDNVIGEVFKMVNADDGKTVKEEDLKKILTEILGSIMLQLEGNPISVSSNSVVHEPLDSSSTLLQPSPSETEA 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00246 369 SMART efh_1 32 60 IPR002048 GO:0005509
Cca04g00246 369 SMART efh_1 254 282 IPR002048 GO:0005509
Cca04g00246 369 SMART efh_1 300 328 IPR002048 GO:0005509
Cca04g00246 369 SUPERFAMILY EF-hand 36 339 IPR011992 -
Cca04g00246 369 ProSitePatterns EF-hand calcium-binding domain. 41 53 IPR018247 -
Cca04g00246 369 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 4 367 - -
Cca04g00246 369 ProSiteProfiles EF-hand calcium-binding domain profile. 28 63 IPR002048 GO:0005509
Cca04g00246 369 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 4 367 - -
Cca04g00246 369 Gene3D - 33 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00246 Cca-Chr4 2418574 2422459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00246 12 368 EF-hand Containing Proteins AT4G38810 69.167 6.25e-174 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00246 - - gmx:100820516 622.468