Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00245 ATGGGGAGTGTTTCGTCCGAAGACGCTTCCGACCGATGCGGAAGCTACAGCCTCAGTGCTGACGTCAGCGAGTCCGAGAGCTGCAGCAGCTTCTCCGCTCGCCGCTTCGACGCCGAGGGAGCTTCCAGCTCCGCCAACCTCTCGCCTCGCCCCCTCGCCGCTCACTTCAACTTCCCGCCGCCGCAGGTTATGCTTCCCGTCATTGGCGGCAAAGACGTCGTCGTTTGGGATCACAAGCGTCATCTCGACTTGTCCGAAGTCGAAATGATGAAGGAGAGGTTCGCTAAGCTGCTTCTCGGAGAAGACATGTCTGGCGGTGGAAAAGGTGTCTGCACCGCGCTTGCAATCTCCAATGCGATAACCAATCTCTCTGCAACTGTGTTTGGGGAAATGTGGAGGTTGGAACCACTGGCGCCACAGAAGAAGGCAATGTGGCGAAGGGAAATGGAGTGGCTGCTATGCGTGAGTGATTCCATTGTGGAGCTGGTGCCGTCTGTGCAGCAGTTTCCTGGGGGTGGAACCTATGAGGTGATGGCGACACGTCCTCGCTCCGATTTGTACATCAATCTTCCGGCGCTGAAGAAGCTTGATGGGATGCTGCTAAGTATGCTTGAAGGGTTTCATGACACGCAGTTTTGGTATGTTGACCGGGGGATTATATTGGGTGATTCCAAGGATTGTGATGCCTATGGTAGACCTTCGGTTAGGCAAGAGGAGAAATGGTGGCTTCCCTCTCCCAAGCTTCCACCAAATGGCTTGTCTGAGGAAAATAGGAAGAGGTTGCAACAGTGTAGGGATTGCACCAATCAGATACTAAAGGCTGCCGTTGCAATTAATAGCTCTGTGCTTGCTGAAATGGAAATTCCCCGCGCCTACATAGAGTCCTTGCCTAAGAATGGAAAGGCTTGTCTAGGGGATATAATTTATCGATATATAACGGCAGATCAGTTCTCACCTGAATGTCTCTTTGATTGCCTGGATCTTTCGTCAGAGCACCACACTCTGGATATAGCTAATAGAATTGAGGCTGCTATACATGTATGGAGGTTGAAGGACCAAAAGAAACATGAAAGTTCAGCAAAATCAAGACGGTCTTGGGGTGGAAAGGTGAAGGGTCTTGTTGCGGACGGACACAGTGAAAAGAACCATTTTCTTGCCCAACGGGCAGAGACACTGCTGGAAAACTTGAAACACCGATTTCCTGGGCTCCCGCAGACTGCACTAGATATGGCCAAAATTCAATATAATAAGGATGTTGGACAGTCTATTCTTGAAAGTTATTCAAGAGTGATGGAGAGCCTGGCCTTTAACATAATGGCGAGGATTGATGATGTCCTATATGTAGATGATAGTATAAAGCGATGTGCAGCTGCAGATTCTCTCTCATTGTTCAGTAGGGGAGGTTTTGGTGGCATGCCCATCCAGAAGCGATTCTCTCCTAGTCCCTTCCCAATTCAACACACCCCATATGCGTCCCCATTTGCAACACCATCGTTCTGTTCCTCCTCTCCTGTAACTGGGAGCCCTTGCAGTCCAGGAAGGATACATGATGTGAAGAGGAATGCTCGGAAGGAGGGTGCAGATTCAAAAGCCGAAAAGTTAGCTACATCTGAGTTTGAGAGGGTGTGGTCATGTGCGGGAAACCTCAGTGCAACAAGAGCGTCTGGCGATGCTCCAGAAAGAGACTAA 1689 0.5015 MGSVSSEDASDRCGSYSLSADVSESESCSSFSARRFDAEGASSSANLSPRPLAAHFNFPPPQVMLPVIGGKDVVVWDHKRHLDLSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGEMWRLEPLAPQKKAMWRREMEWLLCVSDSIVELVPSVQQFPGGGTYEVMATRPRSDLYINLPALKKLDGMLLSMLEGFHDTQFWYVDRGIILGDSKDCDAYGRPSVRQEEKWWLPSPKLPPNGLSEENRKRLQQCRDCTNQILKAAVAINSSVLAEMEIPRAYIESLPKNGKACLGDIIYRYITADQFSPECLFDCLDLSSEHHTLDIANRIEAAIHVWRLKDQKKHESSAKSRRSWGGKVKGLVADGHSEKNHFLAQRAETLLENLKHRFPGLPQTALDMAKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVLYVDDSIKRCAAADSLSLFSRGGFGGMPIQKRFSPSPFPIQHTPYASPFATPSFCSSSPVTGSPCSPGRIHDVKRNARKEGADSKAEKLATSEFERVWSCAGNLSATRASGDAPERD 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00245 562 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 1 562 IPR038937 GO:0005085
Cca04g00245 562 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 85 453 IPR005512 GO:0005085
Cca04g00245 562 MobiDBLite consensus disorder prediction 1 25 - -
Cca04g00245 562 MobiDBLite consensus disorder prediction 507 531 - -
Cca04g00245 562 MobiDBLite consensus disorder prediction 516 531 - -
Cca04g00245 562 Gene3D PRONE domain, subdomain 1 77 316 - -
Cca04g00245 562 Gene3D PRONE domain, subdomain 1 317 458 - -
Cca04g00245 562 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 1 562 - -
Cca04g00245 562 ProSiteProfiles PRONE domain profile. 77 459 IPR005512 GO:0005085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00245 Cca-Chr4 2408367 2411692 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00245 - - gmx:100789706 1054.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00245 04 2408367 2411692 Cca04g00245 04 2408367 2411692 ECH