Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00244 ATGAAGGTGCTGAGCTTCTGCTCCATTTTCCTGCTTTTGGATTTGCTTTTGGTTGCTGCGGAGGACCCTTATAGGTTCTTCGACTGGACCATTACCTACGGAGACATTTATCCTCTAGGAGTTAAACAACAGGGTATTCTTATCAATGGCCAATTTCCGGGTCCTGAAATCTACTCTGTTACCAATGACAACTTGATCATCAACGTACACAATAACTTGCCTGAGCCGTTTCTTCTATCATGGAGTGGTGTTCAGCAAAGGAGAAATTCTTATGAAGATGGAGTTTATGGAACAACATGCCCCATCCCTCCTGGGAAGAACTTCACCTACACACTTCAAGTCAAAGATCAAATTGGAAGTTTCTTCTATTTCCCATCTCTTGCTTTCCACAAGGCAGCTGGTGGCTTTGGTGGCATCAAAATCCTTAGCAGGCCAAGGATTCCTGTCCCATTCCCAGACCCAGCTGATGATTTCACCCTTCTTATTGGAGATTGGTACCAAATTGATCACAAGAAGCTGCAGAGCGTTCTAGATTTTGGACATAAACTTCCATTCCCTCAAGCCGTTCTTATCAATGGTCGTGCAAACGGCACAGCATTCACAGTTGAACAAGGGAAAACATACAGGCTTAGAATATCCAATGTTGGACTTCAAAACACACTCAACTTCAGGATTCAAGGCCACAGCATGAAGTTGGTGGAAGTTGAGGGAACTCACACCATACAGACCACGTATTCCTCGTTAGATGTTCACGTGGGACAGTCTTATTCTGTGCTTGTCACAGCTGATCAAGCACCCAAGGACTACTACATTGCAGTCTCCACTCGTTTCACCAACAAGATCCTCACAAGCACTGCCACCCTTCACTACAGTAACTCCCAGCAACCTGTTTCTGGCCCAATTCCTGGCGGCCCAACCACTCAAATCGATTGGTCCATTGAACAAGCTCGTTCAATCAGGACAAACCTGACTGCAAGTGGACCAAGGCCAAATCCACAAGGCTCATACCATTACGGTCTCATTAACATTAGTAGGACAATTACCCTGGAGAGCTCAGCAGCACAAGTGAATAAGAAACAAAGATATGCAGTGAACAGTGTATCATTCATACCCGCTGACACTCCTCTGAAGCTAGCAGATTACTTCAACATTAGTGGGGTTTTCAAAGTTGGAAGCATCCCAGATACCCCTTCTGGTAAACCCATGTATCTTGACACCTCGGTCATGGGTGCTGATTTTCGAGCCTTCGTCGAGATCGTGTTTCAGAACCACGAAAGTATCGTCCAGAGCTGGCACATTGACGGATACTCATTTTGGGTTGTAGGAATGGATGGTGGTGTGTGGACGCCTAATAGTCGTAACCAGTATAACCTAAGAGATGCAGTATCTAGGTGCACAACACAGGTGTATCCTAAATCATGGACCGCAATATATATGGCTCTAGATAATGTGGGTATGTGGAACGTGAGGAGTGAATTTTGGGCACGACAATACCTTGGACAACAATTCTATATGCGAGTGTATTCACCAGTTGGATCCGTCAGGGATGAATATCCAATTCCAAAGAATGCTCTTCTATGTGGCAAAGCTGCAGGCAGAACAATCAGATCTCTATGA 1617 0.4508 MKVLSFCSIFLLLDLLLVAAEDPYRFFDWTITYGDIYPLGVKQQGILINGQFPGPEIYSVTNDNLIINVHNNLPEPFLLSWSGVQQRRNSYEDGVYGTTCPIPPGKNFTYTLQVKDQIGSFFYFPSLAFHKAAGGFGGIKILSRPRIPVPFPDPADDFTLLIGDWYQIDHKKLQSVLDFGHKLPFPQAVLINGRANGTAFTVEQGKTYRLRISNVGLQNTLNFRIQGHSMKLVEVEGTHTIQTTYSSLDVHVGQSYSVLVTADQAPKDYYIAVSTRFTNKILTSTATLHYSNSQQPVSGPIPGGPTTQIDWSIEQARSIRTNLTASGPRPNPQGSYHYGLINISRTITLESSAAQVNKKQRYAVNSVSFIPADTPLKLADYFNISGVFKVGSIPDTPSGKPMYLDTSVMGADFRAFVEIVFQNHESIVQSWHIDGYSFWVVGMDGGVWTPNSRNQYNLRDAVSRCTTQVYPKSWTAIYMALDNVGMWNVRSEFWARQYLGQQFYMRVYSPVGSVRDEYPIPKNALLCGKAAGRTIRSL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00244 538 Gene3D - 339 535 IPR008972 -
Cca04g00244 538 Pfam Multicopper oxidase 374 509 IPR011706 GO:0005507|GO:0016491
Cca04g00244 538 SUPERFAMILY Cupredoxins 340 529 IPR008972 -
Cca04g00244 538 Gene3D - 155 329 IPR008972 -
Cca04g00244 538 Pfam Multicopper oxidase 157 292 IPR001117 -
Cca04g00244 538 PANTHER MULTI-COPPER OXIDASE 8 531 IPR045087 -
Cca04g00244 538 SUPERFAMILY Cupredoxins 15 171 IPR008972 -
Cca04g00244 538 SUPERFAMILY Cupredoxins 151 330 IPR008972 -
Cca04g00244 538 PANTHER MULTI-COPPER OXIDASE TYPE I FAMILY PROTEIN-RELATED 8 531 - -
Cca04g00244 538 CDD CuRO_3_AAO_like_1 371 492 IPR034275 GO:0005507
Cca04g00244 538 Gene3D - 24 145 IPR008972 -
Cca04g00244 538 Pfam Multicopper oxidase 31 144 IPR011707 GO:0005507
Cca04g00244 538 CDD CuRO_1_AAO_like_1 26 141 IPR034273 GO:0005507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00244 Cca-Chr4 2402655 2407857 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00244 - - gmx:100818914 1009.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00244 04 2402655 2407857 Cca04g00244 04 2402655 2407857 ECH