Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00242 ATGGGAGGAAGAATGCACAGGAAATCGGACTCGGAGGTGACGAGCAACAGCATGGAGCAGTcgtcgtcgccgccgcgttctccgccgccgcggccACTGTACTACGTGCAGAGCCCTTCGAACCACGACGTGGAGAAAATGTCGTACGGTTCAAGCCCCATGGGTTCCCCGCACCACCACTTCCACTACTACACCTCTTCCCCCATCCACCACTCTCGCGAGTCCTCCACCTCCCTCAAGAACCCTCGCCACTTCTCCTCCTCCTGGAAGAAGCTCCACCCCCACCCCCaccacgacgcggccgccgctgccgacgaggacgaggaggacgacCTCCTCCAGCAGTCCTCCCGCAACCTCCGCCTGTACTTGTGCTTCTTTCTGCTCTTCGTGATGCTCTTCACGCTCTTCTCCGTCATCCTCTGGGGCGCCAGCAAGGGCTACAAGCCACGTGTCACTGTGAAGAGCATTGTGTTGGAGAATTTGAATGTACAGTCAGGGAACGATGGAAGTGGGGTTCCAACGGACATGTTGTCATTGAACTCAACGGTCAGAATTGTGTACAGGAATCCTGCAACTTTCTTCGGCGTTCACGTCACTTGTACCCCTCTTCTTCTCTCCTATTACCAGCTTGCACTAGCTTCTGCTCAGGTGCACAAGTTTTATCAGTCGAGGAAAAGTCAGAGGAAGTTGGCGGTAGTGGTGTTAGGACACCAGGTTCCGCTCTATGGTGGGGTGTCTGTTCTGGGGAACACGAAAGAGCACTTGAACAATGTTGCATTGCCACTCAACCTGACGTTTGTAGTGAGATCGAGGGCTTTCATCTTGGGAAGATTGGTTAAGTCTAAATTCTATCGAAGAATCAGATGTTCTGTCACTTTGCATGGCAACAAACTTGGAAAACATCTTAATTTGACAGATTCATGTGTCTACAAATGA 939 0.4665 MGGRMHRKSDSEVTSNSMEQSSSPPRSPPPRPLYYVQSPSNHDVEKMSYGSSPMGSPHHHFHYYTSSPIHHSRESSTSLKNPRHFSSSWKKLHPHPHHDAAAAADEDEEDDLLQQSSRNLRLYLCFFLLFVMLFTLFSVILWGASKGYKPRVTVKSIVLENLNVQSGNDGSGVPTDMLSLNSTVRIVYRNPATFFGVHVTCTPLLLSYYQLALASAQVHKFYQSRKSQRKLAVVVLGHQVPLYGGVSVLGNTKEHLNNVALPLNLTFVVRSRAFILGRLVKSKFYRRIRCSVTLHGNKLGKHLNLTDSCVYK 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00242 312 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 58 312 - -
Cca04g00242 312 MobiDBLite consensus disorder prediction 1 108 - -
Cca04g00242 312 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN 58 312 - -
Cca04g00242 312 MobiDBLite consensus disorder prediction 68 85 - -
Cca04g00242 312 Pfam Late embryogenesis abundant protein 188 291 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00242 Cca-Chr4 2379401 2381629 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00242 - - gmx:100817846 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00242 04 2379401 2381629 Cca04g00242 04 2379401 2381629 ECH