Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00241 ATGGGAGAAGTGGCAGAAGCAAATTATTTCAGATCAGAAATAGCTCTGTTGAACTACTCCGATGCCACCTTCAAACCCCCACTTTCTCCTCTTTTGATCCACATTGATCCCAATGATCACACTTGTTCACCCATTTCGGAACTGCACCCCCAGAACCAACATCCCAAAGATGCCTGGCTTCCTATCACTGAATCCAGAAACGGGAATGCCTTTTTTGCAGCTTTCCATCTTCTTAATTCTAACATTGGATTCCAAGCTCTCATGCTTCCCGTTGCCTTCTCCACTCTTGGTTGGGGTTGGGGTACAGTATGTTTGACAGTAGCATTCGTTTGGCAGCTATATGCCACATTTCTTCTTGTTCAACTTCACGAATGCGTCCCTGGAATTCGTCACAGCAGATACCTCTTCCTTGCCATGGCTGCCTTCGGTAAAAGGTTAGGAAAGGTGGCAGCATTATTCCCGGTGATGTACCTTTCAGGAGGCACATGCGTCGTGCTTATCATCACCGGTGGTGGGACCATGAAACTCTTATTCAAGACACTTTGCCACAACGATGACGGGGACACGTGTAATGGCCACTCTCTCACGGGGGTGGAGTGGTTCTTGGTGTTCACTTGTGTGGCCATTCTCATTGCACAATTGCCCAACCTCAACTCAATGGCCATGGTTTCTCTCGTAGGGGCCGTTACCTCCATCACTTATTGCACCCTCTTTTGGGTCCTCTCTGTTAAGAAGGGTAGGCCCAACAACGTATCTTATGGATCCTCACTGTCCCATCACTCCACCCCACTCCCTAACATCACTCATGTTCTTAATGCCATTGGAATCATTGTGCTAGCTTTCAGAGGTCATAATCTTTTGCTCGAGATACAGGGAACGCTGCCTTCAAATTTGGAACAAAGTTCCAAAGTAGCAATGCGCAGAGGTGTGACAGTGTCCTATGCACTAATTAGCATGTGCGTGTTTCCTCTGGCAATTGCTGGATTCTGGGCCTATGGAAACCAGATTGATGAAGGAGGATTGTTAACTTCGTTGCCACAACTCCACAAGAGGCAAATAACAAAATTCTCAATGGGTGCAATATACGTGCTGGTAATAATACACTGTTTGAGCAGCTACCAAATCTACGCGATGCCCGTATTTGACAACCTGGAACTAAGATACACGAGCATAAAGAATGAGAAATGTTCAGGATTGGTGAGAACATGCTTACGCATATTCTTTGGGGGGTTGACATTTTTTATAGCAGTCACGTTCCCATTTCTGCCAAGCCTAGCAGCACTGATAGGAGGGATGACTCTGGTGCCAGTCACATATGCATACCCTTGTTTCATATGGTTAGCCCTCAAGAAGCCACGAAAAACAAGTCTTGTTTGGTGCTTCAACGTTGCACTTGGCACCTTAGGGATGCTTCTCAGTGCTCTCTTGGTGGCTGCAGCTATAAGGACTCTAGTTGTCAAAGGCCTACATGCTAATTTCTTCAAACCAAAATAA 1494 0.4618 MGEVAEANYFRSEIALLNYSDATFKPPLSPLLIHIDPNDHTCSPISELHPQNQHPKDAWLPITESRNGNAFFAAFHLLNSNIGFQALMLPVAFSTLGWGWGTVCLTVAFVWQLYATFLLVQLHECVPGIRHSRYLFLAMAAFGKRLGKVAALFPVMYLSGGTCVVLIITGGGTMKLLFKTLCHNDDGDTCNGHSLTGVEWFLVFTCVAILIAQLPNLNSMAMVSLVGAVTSITYCTLFWVLSVKKGRPNNVSYGSSLSHHSTPLPNITHVLNAIGIIVLAFRGHNLLLEIQGTLPSNLEQSSKVAMRRGVTVSYALISMCVFPLAIAGFWAYGNQIDEGGLLTSLPQLHKRQITKFSMGAIYVLVIIHCLSSYQIYAMPVFDNLELRYTSIKNEKCSGLVRTCLRIFFGGLTFFIAVTFPFLPSLAALIGGMTLVPVTYAYPCFIWLALKKPRKTSLVWCFNVALGTLGMLLSALLVAAAIRTLVVKGLHANFFKPK 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00241 497 PANTHER LYSINE HISTIDINE TRANSPORTER-LIKE 7 52 492 - -
Cca04g00241 497 Pfam Transmembrane amino acid transporter protein 67 481 IPR013057 -
Cca04g00241 497 PANTHER OS05G0424000 PROTEIN-RELATED 52 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00241 Cca-Chr4 2372854 2376161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00241 49 496 Organic Solute Cotransporters AT1G47670 53.125 3.48e-159 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00241 - - gmx:100793408 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00241 04 2372854 2376161 Cca04g00241 04 2372854 2376161 ECH