Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00234 ATGAACACGCTCCTCCGATCCACTCTCAGGACCAAGACTGCTTCATCTTTAGCATATGCTGCGGGTTCCAGAAGTGTTCAGGAAAATCTCCTTCAGGTTCCTCCATGGTCTAGATCAAATAGTACGGAGCCTTCCTTGGCAAAGGATAATGATGTGAAAAATGGTGAAAGTTTCAAGGGCCATGGTATGCTTGCTCCTTTCACAGCTGGGTGGCAGACTACTGATTTGCATCCTCTGGTTATAGAAAAGTCAGAGGGAAGTTATGTATATGACATTAATGGGAAGAAATATCTTGATGCACTAGCTGGTCTATGGGCCACTTCTTTAGGGGGAAGTGAGCCACGTCTTGTTGATGCTGCCATTGCACAATTGAAGAAGTTGCCATTTTACCATTCCTTTTGGAATCGAACCACAAAACCTTCTTTGGATCTAGCCAAGGAACTCCTAGAAATGTTCACGGCCAGAAAAATGGCGAAAGCTTTTTTTGTTAATAGTGGATCAGAAGCCAATGACACTCAGGTGAAACTTGTATGGTATTATAACAATGCACTTGGAAGACCAAATAAGAAGAAATTCATAGCTCGTGCTAAATCGTATCATGGTTCAACATTGATAGCTGCCAGTCTTTCTGGccttccggctctgcatcaaaaatttgatttgccagctccttttgtattgcacaccgaCTGTCCACATTACTGGCGGTATCATCTTCCAGGTGAGACAGAGGAAGAATTTTCAACTAGATTGGCCAACAATTTGGAGCAGCTGATTCTGAAAGAGGGACCAGAGACTATTGCTGCATTCATTGCTGAACCTGTAATGGGTGCAGGAGGTGTAATGCTTCCACCAGCAACTTATTTTGAGAAGGTCCAAGCCGTTGTCAAGAAGTATGACATTCTTTTTATTGCAGATGAGgtaatctgtgcctttggaaggctggggacaatgtttggatgtgacaaatacaacattaatccagaccttgtatccctggcaaagGCACTGtcttcttcttatttgccaattggagctgtcctggttagtccagaagtttcagaagttatacacgcacaaagcaacaaacttgGTATAttttctcatgggtttacttattctggacaccccacatcctgtgctgttgcacttgaaacactcaagatctataaGGAAAGAAATATTGTTGATCAAGTGAACAAAATCGCCCCAAGGTTCCAAGATGGTGTAAAAGCTTATTCTGACAGTCCCATCATTGGAGAGATACGGGGAACTGGCTTGATTTTGGGCACTGAGTTCACAGACAACAAGTCACCTAATGATCCGTTTCCTCCTGAATGGGGAATAGGTGCCTATTTTGGGGCACAATGTGAGAAGCATGGGATGTTAGTTCGTGTATCGGGCGATAACATCTTGATGTCTCCACCATATATTATATCTCCAGGGGAAGTTGATGAGCTAATCAGCAAATATGGGAAAGCCTTAAAAGACACGGAAAAGAGGGTACAGGAGCTCAAGTCTCAGCGCAAGTAG 1533 0.3503 MNTLLRSTLRTKTASSLAYAAGSRSVQENLLQVPPWSRSNSTEPSLAKDNDVKNGESFKGHGMLAPFTAGWQTTDLHPLVIEKSEGSYVYDINGKKYLDALAGLWATSLGGSEPRLVDAAIAQLKKLPFYHSFWNRTTKPSLDLAKELLEMFTARKMAKAFFVNSGSEANDTQVKLVWYYNNALGRPNKKKFIARAKSYHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYHLPGETEEEFSTRLANNLEQLILKEGPETIAAFIAEPVMGAGGVMLPPATYFEKVQAVVKKYDILFIADEVICAFGRLGTMFGCDKYNINPDLVSLAKALSSSYLPIGAVLVSPEVSEVIHAQSNKLGIFSHGFTYSGHPTSCAVALETLKIYKERNIVDQVNKIAPRFQDGVKAYSDSPIIGEIRGTGLILGTEFTDNKSPNDPFPPEWGIGAYFGAQCEKHGMLVRVSGDNILMSPPYIISPGEVDELISKYGKALKDTEKRVQELKSQRK 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00234 510 Gene3D - 113 395 IPR015421 GO:0003824
Cca04g00234 510 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 21 505 - -
Cca04g00234 510 Pfam Aminotransferase class-III 78 494 IPR005814 GO:0008483|GO:0030170
Cca04g00234 510 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 303 340 IPR005814 GO:0008483|GO:0030170
Cca04g00234 510 Coils Coil 488 508 - -
Cca04g00234 510 SUPERFAMILY PLP-dependent transferases 62 496 IPR015424 -
Cca04g00234 510 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 21 505 - -
Cca04g00234 510 CDD OAT_like 73 495 IPR005814 GO:0008483|GO:0030170
Cca04g00234 510 Gene3D Aspartate Aminotransferase, domain 1 79 495 IPR015422 GO:0003824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00234 K16871 - gmx:100792355 959.903