Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00233 ATGGTTAGAAAACATGGCTGGCAATTACCTGCTCACACTTTTCAGGTTATTGCAATTACTGTATTCTGCTTGTTGGTGATTGCTTTCTATGCTTTTCTTGCTCCCTTCATCGGAGGTCATTTATGGGAATACATCTTCATTGGTGTTTACTCTCCTGTGGCACTCACTGTGTTCATTCTTTATGTCAGATGCACTGCAATTAACCCTGCAGATCCAGGCATTATGTCTAAGTTTGATCCTAGAGGGGGAAATAGGTTCAATTCGGCTCATGATTTATCAGGGAAGCATCATGTTTCCGAACATGATCACATTGCTGCCAGAGAGCAATATTCTCCGTCATCTGCGGCCTCCAAAAGGTCTATGACAAATATGAGCAAGAAAAGTTCTGTGGAAGATCTTGAAAGGGTAGATAATTCAAGGGAACAAAATAACCGAAACTCATGTAATGCAATTGGAGGAATTTGCTGCATATTATTTTCACATGAAGATTGCCAGAAACAGGAAGTTACAGCTGATGAGCAGGCTGGTGGTGAAGATGCTCTGTTCTGCACTTTGTGCAATGCTGAGGTGCGCAAGTTCAGCAAACATTGTAGAAGTTGTGATAAATGTGTTGATGGCTTTGATCACCATTGTCGGTGGCTTAACAATTGTGTGGGTCACAAAAATTACAGCTCTTTTATTGCTCTCATGGCTTTTAGTCTTGCATGGCTAGTTATTGAAGCTGGAGTGGGTGTTGCTGTTTTCGTGCGTTTCTTTGTAAACAAGAGAGGAATGGAATCTGAAATCATTGATAGACTTGGAAATGGATTCTCTCGTCCCCCATTTGCAACTGTTGTGGCTGTATGTACTGCAGTTTCTATCTTGGCTTGTGTGCCTTTGGGTGAGCTTTTCTTTTTCCACATGATACTAATCAGGAAGGGCATCACAACCTATGAATATGTTGTAGCAATGAGAGCCATGAGTGAAGCACCTGCAGGGGCATCTGTGGATGAGGATTTGCCAAATGTACTTTACTCTCCGACAGGCTCAGCCACAACTGGATTGAGCGGAGGAAGTTCTCTTGGTTTGCAGTATAAAGGGGCTTGGTGTACCCCTCCCAGGGTATTTGTGGATTATCAGGATGAAGTTGTGCCTCACTTAGAGCCTGGAATGCTACCGTCAACTGTTGATCCAGATGCAGCTGGGATTGCAGAAAGAGGGCAAAAGTTGCCAAAAAGACCTGTTCGTATCAGTGCTTGGAAGCTTGCTAAGTTGGATTCACAAGAGGCAGTGAGAGCAGCTGCAAAAGCCAGGGCATCTTCTTCAGTTTTGCGACCTGTAGATAACCACCGTTTACCGGAAGCAGAATTGAGCTCTAGTGGCAACATGAGCATCAGAAGTAGTTTGAGCACAGAGACTGGAACTAACAAGGAAATAAAACATGAGTTGAGATTGTCTCCGGTGAGAAATTCTATTGCTCCTAGTCAAGGAAGTCGTGATGAATACGAGACTGGAACCCAAAGTATGAGTAGTTTCAGTAGTCCTAGCCATGTTCAAGAGGCAGTAACACTCAGCCCTCTTCCACAGGGTCGCAGTTTGGGTGGCTTCAGGGCAGGTACCTCAATTCCTAGTTTGGTGCCTGAGCGTCCTTTAACTTCTATAGCAACTTTGTCAAACTTCAGGAACCCAACATCTAATCCTTCTCTTGGATTTGATGGGAGAACAACAATGCCAACAGTGCCAAAAGGAATTGGCAATGATCCATTGTTGCTTTCAACTTCTAACACGTCTATTCTAAGAGATGTGAAACGGACATCAGTCGTTTGGGATCAAGAAGCTGGCAGATATGTGTCAGTTCCATTATTGCCCTCAGAAGCTCGAAATAGGCCATCCATGCGAATAGAGTTGCCAAATTTAAATGCTGAAACAAGCGGTATTGGTAGAAAACCAGCGATTCCTCCTCAGGAGTTGCCATCATCTGCACCCAAGTCTCCTGGGCAGCAGCACATACAAAATCTGATGTATACAGGAGATTCTATCTTTTATGGAGGTCCATTTTTGAGTGTCCCTGTCAGAGATGGTTTGAAAAATGAAAGACATTTGGCATCAGGGGATGCCCAAGATAGTAGCATATCAGTGAACTTGCCCCAAGAGCCAAGATATAAAAGGGATTCACTTTCAAATCAGCTTCCCGTGTTTGTCCCTGGTGGTGGGTTTGAGAATACCCTTCAACCTCGTTCTGGCCTAAATTAG 2232 0.4391 MVRKHGWQLPAHTFQVIAITVFCLLVIAFYAFLAPFIGGHLWEYIFIGVYSPVALTVFILYVRCTAINPADPGIMSKFDPRGGNRFNSAHDLSGKHHVSEHDHIAAREQYSPSSAASKRSMTNMSKKSSVEDLERVDNSREQNNRNSCNAIGGICCILFSHEDCQKQEVTADEQAGGEDALFCTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGHKNYSSFIALMAFSLAWLVIEAGVGVAVFVRFFVNKRGMESEIIDRLGNGFSRPPFATVVAVCTAVSILACVPLGELFFFHMILIRKGITTYEYVVAMRAMSEAPAGASVDEDLPNVLYSPTGSATTGLSGGSSLGLQYKGAWCTPPRVFVDYQDEVVPHLEPGMLPSTVDPDAAGIAERGQKLPKRPVRISAWKLAKLDSQEAVRAAAKARASSSVLRPVDNHRLPEAELSSSGNMSIRSSLSTETGTNKEIKHELRLSPVRNSIAPSQGSRDEYETGTQSMSSFSSPSHVQEAVTLSPLPQGRSLGGFRAGTSIPSLVPERPLTSIATLSNFRNPTSNPSLGFDGRTTMPTVPKGIGNDPLLLSTSNTSILRDVKRTSVVWDQEAGRYVSVPLLPSEARNRPSMRIELPNLNAETSGIGRKPAIPPQELPSSAPKSPGQQHIQNLMYTGDSIFYGGPFLSVPVRDGLKNERHLASGDAQDSSISVNLPQEPRYKRDSLSNQLPVFVPGGGFENTLQPRSGLN 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00233 743 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 9 538 - -
Cca04g00233 743 MobiDBLite consensus disorder prediction 110 127 - -
Cca04g00233 743 ProSiteProfiles DHHC domain profile. 181 231 - -
Cca04g00233 743 MobiDBLite consensus disorder prediction 482 513 - -
Cca04g00233 743 MobiDBLite consensus disorder prediction 109 138 - -
Cca04g00233 743 MobiDBLite consensus disorder prediction 635 662 - -
Cca04g00233 743 Pfam DHHC palmitoyltransferase 180 315 IPR001594 GO:0016409
Cca04g00233 743 MobiDBLite consensus disorder prediction 443 513 - -
Cca04g00233 743 PANTHER PROTEIN S-ACYLTRANSFERASE 19-RELATED 9 538 - -
Cca04g00233 743 MobiDBLite consensus disorder prediction 448 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00233 Cca-Chr4 2237111 2243517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00233 182 312 Lipid Metabolism Gene Families AT4G22750 29.008 1.04e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00233 K20027 - gmx:100805779 1323.53