Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00231 ATGGCAAGTTCTAACAGTTATTTGAGCTTGGCAATTCTGGTAGTTGCTGGATCTTTAATATATAACACAAAAGAGGTCTCAGCTCAGTGTGGAGGAAGTGTGAGTGATCTTGTATCTCAGTGCTCACAGTTTGTACAAAAGTCAGGACCATTTATTAAGCCTTCACCAGGGTGCTGTGCAGTGCTGAAAAAATTCAATGTTCCATGCGCATGCAAACTCATCACTAAAGAAATTGCAAGCCTTGTGAGTATTCCCAAAGCTGTCTTTGTTGCACGCTCTTGTGGCTTGAACCTTCCCGCTGGAATGCATTGTGGAGCTGTTGTAATCCCGCCGAAAGCCATGAAGTGA 348 0.4368 MASSNSYLSLAILVVAGSLIYNTKEVSAQCGGSVSDLVSQCSQFVQKSGPFIKPSPGCCAVLKKFNVPCACKLITKEIASLVSIPKAVFVARSCGLNLPAGMHCGAVVIPPKAMK 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00231 115 PANTHER LIPID TRANSFER PROTEIN 4 112 - -
Cca04g00231 115 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 4 112 - -
Cca04g00231 115 Pfam Probable lipid transfer 10 104 IPR016140 -
Cca04g00231 115 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 30 105 IPR036312 -
Cca04g00231 115 Gene3D - 27 101 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00231 Cca-Chr4 2224067 2225061 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00231 9 110 Acyl Lipid Metabolism Gene Families AT4G33550 37.736 1.55e-22 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00231 - - gmx:112998582 192.971