Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00228 ATGGCCACCACTAATACCATTAATGGGAACACTACTGAAACTGCTCAACCCAATATCATTGCTTCCACAAAGCAGCCTCTCCCTCCTGCCAAGACTGTTGATTCTCAATCTGTTCTCAGAAGGTTGCAATCTGAATTGATGGCTTTGATGATGAGTGGAGATTCTGGAATATCTGCATTTCCTGAGGAGGACAACATATTCTTCTGGAAAGGAACAATAACAGGAAGCAAAGATACAGTGTTTGAAGGCACAGAGTATAAGCTGTCCCTCTCATTTCCCAATGATTACCCTTTTAAGTCTCCAAAAGTCAAGTTTGAAACAACATGCTTCCACCCCAATGTGGATGTGCATGGCAATATATGCTTGGACATACTCCAGGATAAATGGTCATCTGCTTATGATGTCAGAACAATTCTTCTATCTATCCAAAGTCTGCTTGGAGAGCCAAACATTAGTTCACCACTAAATCCACAAGCAGCACAGCTTTGGAGCAATCAAGAAGAGTACAGGAAGATGGTGGAGAAGTTGTACAAATCTGCAAATTGA 546 0.4158 MATTNTINGNTTETAQPNIIASTKQPLPPAKTVDSQSVLRRLQSELMALMMSGDSGISAFPEEDNIFFWKGTITGSKDTVFEGTEYKLSLSFPNDYPFKSPKVKFETTCFHPNVDVHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNPQAAQLWSNQEEYRKMVEKLYKSAN 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00228 181 Pfam Ubiquitin-conjugating enzyme 41 175 IPR000608 -
Cca04g00228 181 CDD UBCc 40 177 IPR000608 -
Cca04g00228 181 Gene3D Ubiquitin Conjugating Enzyme 31 181 IPR016135 -
Cca04g00228 181 PANTHER BNAC06G03670D PROTEIN 18 179 - -
Cca04g00228 181 SMART ubc_7 40 181 - -
Cca04g00228 181 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 110 125 IPR023313 -
Cca04g00228 181 MobiDBLite consensus disorder prediction 1 31 - -
Cca04g00228 181 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 37 181 IPR000608 -
Cca04g00228 181 SUPERFAMILY UBC-like 34 177 IPR016135 -
Cca04g00228 181 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 18 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00228 Cca-Chr4 2178401 2179938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00228 39 146 Miscellaneous Gene Families AT3G17000 31.858 7.73e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00228 K06688 - gmx:100305664 330.872