Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00227 ATGGGGAGAgcggcggcgggagtggcggtgggagtggcggcggtggcgtgcgcggtggcggcggtggcagtggggcggAGAATAAGGAGCAGGGGGAAGTGGAAGAGAGTGGCGAGAGTGTTGAGGGAAGTTGAGGAAGGGTGCGAGGGTTCGGTTGGGAGGCTGAGGCAGGTGGTGGATGCTATGGCTGTTGAGATGCACGCAGGGTTGGCTTCTGAAGGTGGTTCTAAGCTCAAAATGCTTCTCACATATGTTCATACTCTCCCTAATGGGACTGAGAAAGGAACATATTATGCACTTCATCTTGGGAGTACAGATTTTAGGGCTTTGCGGGTTCATTTACATGGTCAACAATCTTCTGTCTTGGAACATGAAGTAGAGCAACAGCCTATTCCCCAACATCTCATGACCAGCACAAGCAAGGATCTCTTTGATTTCATTGCTTCTTCATTAAAGGAATTCATTGAGAAAGAAGGCAATGGTTCTGAGCTTTCACCGGACAGAAGAAGGGAACTGGGATTCACATTTTCTTTCCCTGTGAAACAAATGTCTGTTTCCTCGGGCATTTTAATAAAATGGACGAAAGGGTTTTCAATTGTAGATATGGAAGGAATAGATGTTCCTGCATGTTTGCAGGAAGCATTGGCACGAAAAGAACTAGACATGAGGGTGGCTGCCCTGGTCAATGACACTGTTGGAACATTAGCTCTCGGCCACTATCATGACTCAGATACTGTTGCTTCTGTAATAATTGGCACTGGTACCAATGCTTGCTATTTGGAAAGGGTTGATGGTATCATCAAGTGTCAAGGTCTTCTTACAACCTCAGGATACATGGTTGTAAATATGGAATGGGGAAACTTTTGGTCGTCTCATTTGCCAAGAACATCCTATGATATTGATTTAGATTCCGAAAGCCCTAATCCAAATGATCAGGGTTTTGAGAAAATGATATCAGGAATGTATCTTGGTGACATTGTGAGGAGAGTCATTCTCAGGATGTTGCTAGAGTCAGATATTCTTGGACCTATTTCTTCCAAGCTTTCAATGCCTTTCATACTGAGGACTCCTATGATGGCAGCCATGCACGAGGATGATTCTCCTGACTTGAGAGAAGTAGCAAGGATCCTTAAAGACATCCTTGAGATTCCTCAAGTTCCTTTGAAGTTAAGAAAAGTTGTGGTGAAGGTGTGTGACGTGGTGACTCGCAGAGCTGCGCGATTGGCAGCTGCTGGTATTGTTGGCATCTTGAAGAAGATTGGTAGGGATGGAAGTGGTGGCATTACAGGTGGTGGACGTCGAAGTGATGTGAAAATGAAAAGAACAGTTGTGGCAGTTGAAGGAGGTTTATATTCTGGCTACACATTGTTTAGAGAGTACTTGCATGAAGCTTTGAATGAAATATTGGGGGAAGATATTGCTAAGCATGTGATACTTAAGGTCACTGAAGATGGATCGGGCATTGGAGCAGCACTGCTTGCTGCCTCGCATTCATCTTATAATGTGGATACAGCAAAGATGCtataa 1527 0.4172 MGRAAAGVAVGVAAVACAVAAVAVGRRIRSRGKWKRVARVLREVEEGCEGSVGRLRQVVDAMAVEMHAGLASEGGSKLKMLLTYVHTLPNGTEKGTYYALHLGSTDFRALRVHLHGQQSSVLEHEVEQQPIPQHLMTSTSKDLFDFIASSLKEFIEKEGNGSELSPDRRRELGFTFSFPVKQMSVSSGILIKWTKGFSIVDMEGIDVPACLQEALARKELDMRVAALVNDTVGTLALGHYHDSDTVASVIIGTGTNACYLERVDGIIKCQGLLTTSGYMVVNMEWGNFWSSHLPRTSYDIDLDSESPNPNDQGFEKMISGMYLGDIVRRVILRMLLESDILGPISSKLSMPFILRTPMMAAMHEDDSPDLREVARILKDILEIPQVPLKLRKVVVKVCDVVTRRAARLAAAGIVGILKKIGRDGSGGITGGGRRSDVKMKRTVVAVEGGLYSGYTLFREYLHEALNEILGEDIAKHVILKVTEDGSGIGAALLAASHSSYNVDTAKML 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00227 508 PANTHER HEXOKINASE-3 1 501 - -
Cca04g00227 508 CDD NBD_sugar-kinase_HSP70_actin 99 269 - -
Cca04g00227 508 Pfam Hexokinase 248 495 IPR022673 GO:0005524|GO:0005975|GO:0016773
Cca04g00227 508 PRINTS Hexokinase family signature 98 114 - -
Cca04g00227 508 PRINTS Hexokinase family signature 172 197 - -
Cca04g00227 508 PRINTS Hexokinase family signature 224 240 - -
Cca04g00227 508 PRINTS Hexokinase family signature 247 261 - -
Cca04g00227 508 PRINTS Hexokinase family signature 312 334 - -
Cca04g00227 508 PRINTS Hexokinase family signature 394 416 - -
Cca04g00227 508 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Cca04g00227 508 SUPERFAMILY Actin-like ATPase domain 244 499 IPR043129 -
Cca04g00227 508 SUPERFAMILY Actin-like ATPase domain 26 242 IPR043129 -
Cca04g00227 508 ProSitePatterns Hexokinase domain signature. 172 197 IPR019807 GO:0004396|GO:0005524|GO:0006096
Cca04g00227 508 Pfam Hexokinase 41 240 IPR022672 GO:0005524|GO:0005975|GO:0016773
Cca04g00227 508 ProSiteProfiles Hexokinase domain profile. 35 495 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Cca04g00227 508 Gene3D - 83 494 - -
Cca04g00227 508 PANTHER HEXOKINASE 1 501 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Cca04g00227 508 Gene3D - 61 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00227 Cca-Chr4 2171121 2176029 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00227 K00844 - gmx:100790064 824.698