Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00216 ATGGACGACGTGTGCGAAGGCAAGGACTTCACGTTCCCGAAGCAGGAGGAGAAGATTCTGGACTTCTGGTCCCAAATCGATGCGTTCCACACTCAGCTAGCCCTCACCAAGGACAAGCCGGAGTACATCTTCTACGACGGCCCTCCCTTCGCCACCGGCCTCCCTCACTACGGCCACATCCTCGCCGGCACCATCAAGGACATCGTCACGCGCTACCACTCCATGACCGGCCACCACGTCACGCGCCGCTTCGGCTGGGACTGCCACGGCCTCCCCGTCGAGAACGAGATCGACAAGAAGCTCGGCATCAAGAAGCGCGAGGACGTCCTCAAGCTCGGAATCGACAAGTACAACGAGGAGTGCCGCAGCATCGTCACGCGCTACGTCACCGAGTGGGAGACCGTCATCACGCGTACCGGAAGGTGGATCGACTTCAAGAACGATTACAAGACCATGGACTTAAAGTTCATGGAGTCCGTGTGGTGGGTTTTCGCGCAGTTGTACGCCAAAAACCTTGTCTATAAAGGCTTCAAGGTCATGCCGTATAGCACTGGCTGCAAAACTCCGCTCTCTAATTTCGAAGCTGGTCAGAATTATAAGGATGTGTCTGATCCAGAAGTATTCATGACGTTTCCAGTCGTGGGGGATCCACATGGTGCTTCCTTTGTAGCATGGACGACAACTCCATGGACTCTTCCTAGCAATCTTGCTCTCTGCATCAATGACAATTTTACCTATGTGAAGGTTCGCAATAAGTACTCGGGTAAAGTTTATATTGTTGCTGAATCTCGTTTGTCTGCAATTCATAACCCTAAGGAGAAACCCAAAGAAGCTGTTGTTAATAGTACAAATGATGCTCCTAAAAATACAAAAGCAAAGAGCAAGGGAGCTTCGGGTGGAAAAACGGAAAATGTGTTGGATTCTTTTGAAGTGCTGGAGAAATTCTCAGGAACATCATTAGTGGGGACAAAGTATGAACCATTATTTAATTATTTCATGGAGTTATCCGATACGGCTTTTAGAGTTGTTGCCGACAATTATGTTACTGATGATAGTGGTACTGGTGTTGTCCATTGTGCCCCTGCTTTTGGTGAAGATGATTTCCGTGTTTGCATTGAAAATCAAATTATTAGCAAGGATAAACTAATTGTAGCTGTTGACGATGATGGATGCTTTACTGAAAAAATTACTGACTTTAGCGGGTGCTACATCAAACATGCTGACAAAGATATCATTGAAGCTGTGAAGGCAAAGGGTAGGCTGGTTAAGTCTGGAGCTTTTACACATTCTTACCCTTACTGCTGGAGATCTGATACCCCTCTCATTTACAGAGCTGTTCCAAGTTGGTTTGTTAGGGTGGAGTTGTTGAAAGAGCAATTGTTGGAAAACAATAAGCAGACCTACTGGGTCCCTGATTTTGTCAAGGACAAACGATTTCACAATTGGCTGGAAAATGCAAGAGATTGGGCAATTAGTCGTAGTAGATTTTGGGGGACACCTCTCCCTCTATGGATTAGTGAGGATGAGAAGGAAATAGTTGTTATAGATTCTGTTGCAAAACTTGAAAAGCTTTCAGGTGTAAAGGTGTTTGACCTTCACCGTCACAACATTGATCATATTACAATTAAATCTGACAGTGGCCGTGTACTTCGCCGTGTTGATGATGTGTTTGACTGCTGGTTTGAGAGTGGATCCATGCCCTATGCATATATCCATTATCCTTTTGAAAATGTTGAGCTATTTGAGAAGAATTTTCCTGGCCATTTTGTTGCTGAAGGGCTGGATCAAACCCGTGGTTGGTTTTATACACTTATGGTGCTGGCTACTGCATTATTTGGCAAACCTGCATTTAGGAATCTAATCTGCAATGGACTTGTCCTGGCTGAAGATGGGAAAAAGATGAGTAAAAGCTTGAAGAATTATCCTTCACCAATGGAAGTTATTAATGATTATGGAGCAGATGCCTTGCGATTGTACCTTATCAACTCTCCTGTTGTGCGTGCTGAGCCACTTCGTTTTAAGAAGGAAGGAGTTTATGGTGTTGTTAGGGATGTTTTCCTTCCATGGTATAATGCATATAGGTTCCTTGTTCAAAATGCAAAGAGGCTTGAAATTGAAGGTCTAGCACCTTTTGTCCCCATTGATCAGGCTACACTTCTGAAGTCATCGAATGTTCTTGATCAGTGGATTAACTCAGCCACTCAAAGCCTTGTTCATTTTGTCAGACAAGAAATGGATGGTTACCGCCTTTACACGGTGGTTCCTTATCTTCTGAAGTTTCTTGATAACCTTACAAATATTTATGTAAGGTTCAACCGTAAGAGACTTAAAGGTCGTTCTGGGGAAGAAGACTGCAGGATAGCACTATCAACTCTTTACAATGTGCTTTTGTTATCCTGTAAAGTGATGGCTCCTTTTACACCTTTCTTCACTGAGGTGCTCTATCAAAATATGAGAAAAGTTTGTAATGGATCAGAGGAAAGCATACATTATTGCAGTTTTCCTACAGAAGAAGGAAAGAGGGGAGACCGAATTGAGCAGAGTGTTTCTAGGATGATGACTATAATTGATCTGGCCAGAAACATCCGCGAGCGCCACAACAAGCCTCTTAAGGCTCCACTAAGGGAGATGGTTATAGTTCATCCTGATGCAGACTTCCTTGATGACATAAATGGAAAATTGAAGGAGTATGTGCTGGAGGAACTCAATGTACGATCCCTTGTTCCATGTAATGATACATTGAAATATGCATCTTTACGTGCCGAGCCTGAATTCAGTGTTTTAGGTAAGAGACTAGGAAAATCCATGGGCATTGTTGCCAAAGAGGTAAAAGCAATGTCACAGGAAGAAATTTTGGCTTTTGAGAATGCTGGAGAAGTCACCATTGCAAATCACTGTCTGAAGCTGACTGATATTAAGGTTCTCCGTGATTTTAAACGACCTGATGGTTTGACTGAGAATGAGGTTGATGCTGCTGGAGATGGTGATGTTCTAGTTATATTGGACTTGCGCCCTGATGAGTCATTGTTTGAGGCTGGTGCTGCTCGAGAGATTGTGAACAGGATTCAGAAGTTACGGAAGAAAGTTGCTCTTGAGCCAACCGACATGGTGGAGGTTTACTTTGAATCATTAGATGATGAAAAATCAATCTCTCAGAGAGTTTTGCATTCACAGGAAACCTACATCAGAGATGCCATTGGTTCTCATTTGCTTCCACATTCTCTGATGCCTGAACATGCAGTTATCCTTGGCGAAGAGAGATTCCACGGGATAGCCAACATGTCATTTGGTATCACATTGACGAGACCTGCATTGATGTTTAACATAGAAGCCATTCAGTCACTGTTTACAGGTGATGCAAAATGTGCACATAATTTGCAAGCTTACCTGCTATCGAGGGATCATTTGAATTTGAAGTCTGAGTTTCAAGAAGGAAATGGAAAGAAAATTGTTGATTCAATTGAACAGCAACCTGCTGTGGAAGTGGTTCTTGGTGAGCACGTCTTTCTAACTGTGGGAGACTATTACCTTGCCAGAAAATCTGACTGA 3549 0.4356 MDDVCEGKDFTFPKQEEKILDFWSQIDAFHTQLALTKDKPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYHSMTGHHVTRRFGWDCHGLPVENEIDKKLGIKKREDVLKLGIDKYNEECRSIVTRYVTEWETVITRTGRWIDFKNDYKTMDLKFMESVWWVFAQLYAKNLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVSDPEVFMTFPVVGDPHGASFVAWTTTPWTLPSNLALCINDNFTYVKVRNKYSGKVYIVAESRLSAIHNPKEKPKEAVVNSTNDAPKNTKAKSKGASGGKTENVLDSFEVLEKFSGTSLVGTKYEPLFNYFMELSDTAFRVVADNYVTDDSGTGVVHCAPAFGEDDFRVCIENQIISKDKLIVAVDDDGCFTEKITDFSGCYIKHADKDIIEAVKAKGRLVKSGAFTHSYPYCWRSDTPLIYRAVPSWFVRVELLKEQLLENNKQTYWVPDFVKDKRFHNWLENARDWAISRSRFWGTPLPLWISEDEKEIVVIDSVAKLEKLSGVKVFDLHRHNIDHITIKSDSGRVLRRVDDVFDCWFESGSMPYAYIHYPFENVELFEKNFPGHFVAEGLDQTRGWFYTLMVLATALFGKPAFRNLICNGLVLAEDGKKMSKSLKNYPSPMEVINDYGADALRLYLINSPVVRAEPLRFKKEGVYGVVRDVFLPWYNAYRFLVQNAKRLEIEGLAPFVPIDQATLLKSSNVLDQWINSATQSLVHFVRQEMDGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEEDCRIALSTLYNVLLLSCKVMAPFTPFFTEVLYQNMRKVCNGSEESIHYCSFPTEEGKRGDRIEQSVSRMMTIIDLARNIRERHNKPLKAPLREMVIVHPDADFLDDINGKLKEYVLEELNVRSLVPCNDTLKYASLRAEPEFSVLGKRLGKSMGIVAKEVKAMSQEEILAFENAGEVTIANHCLKLTDIKVLRDFKRPDGLTENEVDAAGDGDVLVILDLRPDESLFEAGAAREIVNRIQKLRKKVALEPTDMVEVYFESLDDEKSISQRVLHSQETYIRDAIGSHLLPHSLMPEHAVILGEERFHGIANMSFGITLTRPALMFNIEAIQSLFTGDAKCAHNLQAYLLSRDHLNLKSEFQEGNGKKIVDSIEQQPAVEVVLGEHVFLTVGDYYLARKSD 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00216 1182 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 49 60 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cca04g00216 1182 Gene3D HUPs 398 670 IPR014729 -
Cca04g00216 1182 Gene3D HUPs 4 209 IPR014729 -
Cca04g00216 1182 TIGRFAM ileS: isoleucine--tRNA ligase 10 883 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Cca04g00216 1182 CDD Anticodon_Ia_Ile_ABEc 673 860 IPR033709 GO:0000049
Cca04g00216 1182 Gene3D - 675 867 - -
Cca04g00216 1182 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 688 936 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cca04g00216 1182 Pfam Domain of unknown function (DUF5915) 896 1062 - -
Cca04g00216 1182 Hamap Isoleucine--tRNA ligase [ileS]. 2 1095 IPR023586 GO:0004822
Cca04g00216 1182 PANTHER BNAUNNG00270D PROTEIN 1 1111 - -
Cca04g00216 1182 Pfam Anticodon-binding domain of tRNA ligase 727 876 IPR013155 GO:0004812|GO:0006418
Cca04g00216 1182 Pfam tRNA synthetases class I (I, L, M and V) 308 669 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cca04g00216 1182 Pfam tRNA synthetases class I (I, L, M and V) 18 274 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cca04g00216 1182 PANTHER SOLEUCYL-TRNA SYNTHETASE 1 1111 IPR023586 GO:0004822
Cca04g00216 1182 MobiDBLite consensus disorder prediction 272 300 - -
Cca04g00216 1182 MobiDBLite consensus disorder prediction 282 297 - -
Cca04g00216 1182 PRINTS Isoleucyl-tRNA synthetase signature 42 53 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Cca04g00216 1182 PRINTS Isoleucyl-tRNA synthetase signature 223 246 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Cca04g00216 1182 PRINTS Isoleucyl-tRNA synthetase signature 552 565 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Cca04g00216 1182 PRINTS Isoleucyl-tRNA synthetase signature 592 601 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Cca04g00216 1182 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 201 431 IPR009008 GO:0002161|GO:0006418
Cca04g00216 1182 CDD IleRS_core 398 673 - -
Cca04g00216 1182 SUPERFAMILY Nucleotidylyl transferase 10 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00216 Cca-Chr4 2048963 2064898 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00216 K01870 - gmx:100791830 2258.41