Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00215 ATGTTTTTGGCGAGACCCATTTTCCGAGGACCCATTTCCCTTTGGGCGTTGCACTCTTCTTCTTCCTACGCATATTCCTCAGCAGCCGCTATTCAAGCTGAGAGAACCATCAAAGAAGGCCCCAGAAACGATTGGACCCGAGACCAAGTTAAATCAATCTACGACTCTCCCATTCTCGATCTTCTCTTCCATGGGGCTCAAGTTCATAGACATGCTCATAACTTTAGGGAAGTGCAGCAGTGTACTCTTCTGTCTATCAAAACAGGAGGGTGCAGTGAAGATTGTTCCTATTGTCCTCAATCCTCTAAGTATGACACGGGAATCAAAGGCCAGCGCCTTATGAACAAGGAAGCTGTTCTCGGGGCTGCAAAGAAGGCAAAAGAAGCTGGGAGCACTCGCTTTTGTATGGGTGCTGCGTGGAGGGATACTCTAGGAAGAAAGAGCAACTTCAACCAGATCCTTGAATATGTGAAAGACATAAGGGATATGGGGATGGAGGTTTGTTGCACCCTTGGCATGCTGGAGAAACAGCAGGCTGTTGAACTCAAGAAGGCAGGTTTCACTGCCTATAATCACAATCTTGACACTTCTAGGGAATATTATCCAAACATCATCACAACAAGGAGTTATGATGAGCGCCTGAAAACCCTTGAGTTTGTTCGTGATGCAGGCATCAATGTTTGTTCTGGAGGAATTATAGGGCTTGGAGAAGCAGAGGAGGACCGTGTAGGTTTGTTACATACATTGTCAACACTTCCCACCCATCCAGAGAGTGTTCCTATTAATGCACTTGTTGCTGTAAAGGGAACCCCTCTTGAGGATCAGAAGCCTGTTGAAATATGGGAGATGATTCGCATGATAGCCACAGCACGTATCATAATGCCAAAAGCAATGGTCAGGTTATCAGCTGGCAGAGTTCGGTTCTCCGTACCCGAGCAGGCACTGTGCTTTCTTGCTGGGGCAAATTCTATATTCACTGGTGAAAAGCTTCTCACTACTCCTAACAACGATTTTGATGCTGATCAAAACATGTTTAAAATTCTTGGACTTCTCCCAAAAGCTCCAAGCTTACAAGAAGGTGAAACTAGTGAAACAGAAGATTACAAAGAAGCTGCTTCTTCTAGTTGA 1128 0.453 MFLARPIFRGPISLWALHSSSSYAYSSAAAIQAERTIKEGPRNDWTRDQVKSIYDSPILDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSKYDTGIKGQRLMNKEAVLGAAKKAKEAGSTRFCMGAAWRDTLGRKSNFNQILEYVKDIRDMGMEVCCTLGMLEKQQAVELKKAGFTAYNHNLDTSREYYPNIITTRSYDERLKTLEFVRDAGINVCSGGIIGLGEAEEDRVGLLHTLSTLPTHPESVPINALVAVKGTPLEDQKPVEIWEMIRMIATARIIMPKAMVRLSAGRVRFSVPEQALCFLAGANSIFTGEKLLTTPNNDFDADQNMFKILGLLPKAPSLQEGETSETEDYKEAASSS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00215 375 SMART BATS_2 260 352 IPR010722 -
Cca04g00215 375 SMART MiaB 81 289 IPR006638 GO:0003824|GO:0051536
Cca04g00215 375 ProSiteProfiles Radical SAM core domain profile. 76 305 IPR007197 GO:0003824|GO:0051536
Cca04g00215 375 SFLD biotin synthase like 38 357 - -
Cca04g00215 375 TIGRFAM bioB: biotin synthase 53 350 IPR002684 GO:0004076|GO:0009102
Cca04g00215 375 Hamap Biotin synthase [bioB]. 43 353 IPR002684 GO:0004076|GO:0009102
Cca04g00215 375 Pfam Radical SAM superfamily 88 246 IPR007197 GO:0003824|GO:0051536
Cca04g00215 375 PIRSF Biotin_synth 26 359 IPR024177 -
Cca04g00215 375 SUPERFAMILY Radical SAM enzymes 43 352 - -
Cca04g00215 375 PANTHER BIOTIN SYNTHASE 21 371 IPR002684 GO:0004076|GO:0009102
Cca04g00215 375 CDD Radical_SAM 88 288 - -
Cca04g00215 375 MobiDBLite consensus disorder prediction 356 375 - -
Cca04g00215 375 Gene3D Aldolase class I 42 354 IPR013785 -
Cca04g00215 375 Pfam Biotin and Thiamin Synthesis associated domain 260 350 IPR010722 -
Cca04g00215 375 SFLD biotin synthase 38 357 IPR024177 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00215 Cca-Chr4 2043454 2047158 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00215 K01012 - gmx:732577 701.434