Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00212 ATGAATGACCAAAACACAACATTGGGACTTTGTGAGTGGTCCCACACTAAGGTTTTCTCTTGCCCTTACCATCCATCACGTACATATATATCTATGTGTATGCAAGCTGCTGGCTGGCTACTACTTATGTTATTTCTTTCCCTCTTTCATTTCATTCCAATTTCCAACCAAACCCCGTTTTCAGAAATGGAGATAGAGCAAGAAGCAAGTAGGAATGAAAAGGGTGTTGGTGAGTGTGGTGAAATGATGAGGGTTTGTGATGATAAGAGAAGGATGTATTATGTTGTGTGGGAAGATTTGAGTGTTGTAGTTCCAAACTTTGGGAATGGACACACAAAGAGGTTGCTGAATGGGTTGAGCGGATATGCTGAACCAAACAGAATCATGGCTATCATGGGTCCTTCTGGCTCTGGAAAATCTACTCTTCTTGATGCTTTGGCAGGTAGACTATCTAGAAACGTTATCATGTCTGGAAATGTGGTTATAAATGGAAAGAAGAGGAAATTGGACTATGGGGGTGTAGCTTATGTGACCCAAGAAGACACATTGCTGGGAACACTAACAGTGAGAGAGACAATATCTTACTCAGCCAATCTAAGGCTCCCATCTAGCATGAGCAAAGAAGAGGTGAATGACTTGATAGAGGGAACAATCATGGAAATGGGTCTTCAAGAGTGTGCTGATAGGCTTATAGGGAATTGGCATTTGAGAGGCATAAGCGGTGGAGAAAAGAAAAGACTAAGCATAGCACTTGAAATCCTCACAAGGCCTTCCCTCTTGTTCCTTGATGAACCCACCAGCGGTTTGGACAGTGCCTCAGCATATTTTGTTGCTCAAACTTTGAGAAACATAGCTCATGATGGCAAGACTGTTATCTCTTCTATACATCAGCCAAGTAGTGAGGTTTTCTCACTCTTTGACCATCTCTTTCTTCTTTCTGGAGGTCAAACTATTTACTTTGGAGCAGCACAAAAGGCAGTTGAGTTCTTTGCCAAAGCGGGATTCCCATGTCCAAGTAGAAGAAACCCTTCAGATCATTTCCTCCGTTGTATTAATTCAGACTTTGATGATGTCACAACCACTATGAAGGCCTCCCAAAGAATTCATGAAGGAATATCAACGGGATTATCAACTGCAGCAATCAAAGCAATTCTCATAGAGAAATACCGATGGTCAGAACACGCAACCACCGCAAGAGCAAGAATCAAAGAAATCTCAAACATAAATGAAGGACGTGATTTTGAAAGCAAAAGCAAATGCGAAGCAAAATGGTGGAAGCAACTATCAACGCTGACTCGTAGATCATTCGTGAACATGTCTAGAGATGTGGGATACTACTGGATAAGGATAACTATCTACGTTGCCTTATCATTGTGTGTTGGAACAATCTTTTACGGAGTTGGGTCGAGTTATAGAGCCATTTTTGCAAGAGGAGCATGCGGAGCTTTTATATCAGGTTTCATGACATTCATGTCCATAGGGGGCTTCCCATCTTTCATAGAAGAAATGAAGGTGTTCGATAAAGAAAGACGAAATGGGCATTATGGCGTTGGAGTATACATTTTATCAAATTTTCTCTCTTCATTTCCCTTTGTGGCAGTGATGTCCTTTGGTACTGGGACAATAACCTATTACATGGTTAAGTTTCGTTCAGAATTTTCACATTTTTTGTATATTTGTCTGGATCTTCTTGGCTGCATCGCGGTTGTGGAGAGCTCCATGATGATTATAGCTTCATTGGTTCCCAACTTTCTAATGGGATTGATAATTGGAGCAGGATATATTGGTATTATGATGATGACTGCTGGCTATTTCCGACAGATCCCTGATCTTCCCAAATTCTTCTGGCGTTATCCAATATCATACATCAATTATGGCGCATGGGGATTGCAGGGAGCTTTCAAGAATGACATGATTGGGATGGAGTTTGACTCCTTAGAACCTGGAGGCCCAAAACTGAAAGGAGAAATGATCCTCAAAACCATGCTTGGCATTCAAGTTGATAATTCAAAGTGGTGGGACTTGGCTGCAGTCATGATCATCCTCATATTTCTCAGAGTTCTTTTCTTTTTCATTCTGAAATTTAAGGAGAGAGTTGCACCTTTCCTTTATGGTATCTACGCCAAGCAAACACTTCACCGCATCAACAAGCGACCTTCGTTCAGGAAAGCACCATCTTTCCCTTCAAAGCGTCACCAATCACTGCATCCCTTGTCTTCTCAAGAGGGTCTCAACTCCCCTATTCATTAG 2250 0.416 MNDQNTTLGLCEWSHTKVFSCPYHPSRTYISMCMQAAGWLLLMLFLSLFHFIPISNQTPFSEMEIEQEASRNEKGVGECGEMMRVCDDKRRMYYVVWEDLSVVVPNFGNGHTKRLLNGLSGYAEPNRIMAIMGPSGSGKSTLLDALAGRLSRNVIMSGNVVINGKKRKLDYGGVAYVTQEDTLLGTLTVRETISYSANLRLPSSMSKEEVNDLIEGTIMEMGLQECADRLIGNWHLRGISGGEKKRLSIALEILTRPSLLFLDEPTSGLDSASAYFVAQTLRNIAHDGKTVISSIHQPSSEVFSLFDHLFLLSGGQTIYFGAAQKAVEFFAKAGFPCPSRRNPSDHFLRCINSDFDDVTTTMKASQRIHEGISTGLSTAAIKAILIEKYRWSEHATTARARIKEISNINEGRDFESKSKCEAKWWKQLSTLTRRSFVNMSRDVGYYWIRITIYVALSLCVGTIFYGVGSSYRAIFARGACGAFISGFMTFMSIGGFPSFIEEMKVFDKERRNGHYGVGVYILSNFLSSFPFVAVMSFGTGTITYYMVKFRSEFSHFLYICLDLLGCIAVVESSMMIIASLVPNFLMGLIIGAGYIGIMMMTAGYFRQIPDLPKFFWRYPISYINYGAWGLQGAFKNDMIGMEFDSLEPGGPKLKGEMILKTMLGIQVDNSKWWDLAAVMIILIFLRVLFFFILKFKERVAPFLYGIYAKQTLHRINKRPSFRKAPSFPSKRHQSLHPLSSQEGLNSPIH 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00212 749 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 91 744 - -
Cca04g00212 749 ProSitePatterns ABC transporters family signature. 239 253 IPR017871 GO:0005524
Cca04g00212 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 332 IPR027417 -
Cca04g00212 749 Pfam ABC transporter 116 267 IPR003439 GO:0005524
Cca04g00212 749 MobiDBLite consensus disorder prediction 722 749 - -
Cca04g00212 749 SMART AAA_5 125 315 IPR003593 -
Cca04g00212 749 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 95 339 IPR003439 GO:0005524
Cca04g00212 749 MobiDBLite consensus disorder prediction 732 749 - -
Cca04g00212 749 Pfam ABC-2 type transporter 296 352 IPR043926 GO:0140359
Cca04g00212 749 Pfam ABC-2 type transporter 427 635 IPR013525 GO:0016020|GO:0140359
Cca04g00212 749 PANTHER ABC TRANSPORTER G FAMILY MEMBER 13 91 744 - -
Cca04g00212 749 Gene3D - 85 334 IPR027417 -
Cca04g00212 749 CDD ABCG_EPDR 94 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00212 Cca-Chr4 2000061 2012577 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00212 61 297 Acyl Lipid Metabolism Gene Families AT1G54350 29.197 4.65e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00212 K05681 - gmx:100806806 1181.39