Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00210 ATGGATAGCCTCCGAGCCACTTACAAAGACGAAGAGGATGAAGAAGACGAGGCACCACCTCCGCCACCAACCACCGCCGCAGCCACCGACGCCGAATCACCGGAACCCCCTCCCGCCGCCACCAGTACCCCCTCCGACACCCCGACCGAGCCCCCCAACGACGCCCGATCGGAGCCAGACGACGACCTCTCCGACGACGAGGCCGCCTCCGACGGCTCCAAGAAGTCGCCGAAGTCCGGCCGCGACGAGGGCGACGCCTCCGACGAGGAACCGCCGCCGAAGAAGCAGAAGCCGCTCTCCTCTCTGACGGCGGTGAAGGAGGAATCGCCGTCTCCTGCGCCTCCGGAGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCGGCGGCCGCCGCTCCGGCGGCGAACGGCGCGGCGCCGAAGAAATCGAAGAAGAAGAACAACAACGTGTGGGCGACGAAGTCGACGCGGAAGGGGaagaagaagaacaaaggcagtagcaacaacaacaacaacggcaacaacGCGAACGGCGAGGACAACGTGCTGATCACGCCGGTGCCGCGGTTCCCGGACAAGAGCGACGACACGTCGGAGATGAAGATTTGCCTCTCGAAGGTTTACAAAGCGGAGAAGGTTGAACTGAGCGAGGATCGAATGAGTGCGGGGAGCACCAAGGGTTACAGAATGGTGAGGGCCACGCGCGGGGTCGCGGAGGGCGCGTGGTACTTTGAGATTAAGGTTTTGAAGTTGGGGGAGAGTGGGCACACGCGCCTTGGGTGGAGCACTGAGAAGGGTGATTTGCAGGCTCCGGTTGGGTACGATGGGAACAGTTTCGGGTACAGGGATATTGATGGGAGTAAGATTCATAAGGCTCTTAGGGAGAAGTATGGAGAGGAAGGGTATAAGGAAGGGGATGTTATTGGTTTCTATATCAATTTGCCTGATGGGGAAAAGTATGCCCCCAAAGCTCCCCATATGGTGTGGTATAAGGGCCAGCGGTATGTTTGTGCTCAGGATTCCAAGGAGGATCCGCCCCAAGTTGTGCCTGGAAGTGAGATATCATTCTTTAAAAATGGCATATGCCAAGGTGTAGCTTTCAAGGATCTTCAAGGTGGCCGTTACTATCCTGCTGCTTCAATGTTTACTCTTCCCAATGAACCAAACTGCACAGTCAAGTTCAACTTTGGTCCTGACTTTGAATGCTTTCCTGAGGATTTCAATGAACGGCCTATTCCCAGGCCAATGATTGAAGTTCCTTATCATGGTTTTGACAATCGAGTTGAAATTGGAGAGGCTAATGAGAAGAAATCCTAG 1638 0.4292 MDSLRATYKDEEDEEDEAPPPPPTTAAATDAESPEPPPAATSTPSDTPTEPPNDARSEPDDDLSDDEAASDGSKKSPKSGRDEGDASDEEPPPKKQKPLSSLTAVKEESPSPAPPEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAPAANGAAPKKSKKKNNNVWATKSTRKGKKKNKGSSNNNNNGNNANGEDNVLITPVPRFPDKSDDTSEMKICLSKVYKAEKVELSEDRMSAGSTKGYRMVRATRGVAEGAWYFEIKVLKLGESGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKIHKALREKYGEEGYKEGDVIGFYINLPDGEKYAPKAPHMVWYKGQRYVCAQDSKEDPPQVVPGSEISFFKNGICQGVAFKDLQGGRYYPAASMFTLPNEPNCTVKFNFGPDFECFPEDFNERPIPRPMIEVPYHGFDNRVEIGEANEKKS 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00210 545 MobiDBLite consensus disorder prediction 239 303 - -
Cca04g00210 545 CDD SPRY_Ash2 320 507 - -
Cca04g00210 545 SUPERFAMILY Concanavalin A-like lectins/glucanases 309 511 IPR013320 -
Cca04g00210 545 Pfam SPRY domain 349 425 IPR003877 GO:0005515
Cca04g00210 545 ProSiteProfiles B30.2/SPRY domain profile. 289 508 IPR001870 -
Cca04g00210 545 MobiDBLite consensus disorder prediction 204 224 - -
Cca04g00210 545 MobiDBLite consensus disorder prediction 68 95 - -
Cca04g00210 545 MobiDBLite consensus disorder prediction 272 288 - -
Cca04g00210 545 MobiDBLite consensus disorder prediction 1 123 - -
Cca04g00210 545 PANTHER SET1/ASH2 HISTONE METHYLTRANSFERASE COMPLEX SUBUNIT ASH2 22 528 IPR037353 GO:0048188|GO:0051568
Cca04g00210 545 Gene3D - 307 521 IPR043136 -
Cca04g00210 545 SMART SPRY_3 346 507 IPR003877 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00210 Cca-Chr4 1984035 1987776 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00210 K14964 - gmx:100816796 534.258